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. 2014 Oct 2;10(10):e1003835. doi: 10.1371/journal.pcbi.1003835

Figure 4. Hierarchical free energy dendrogram for three selected promoters.

Figure 4

Basins of attraction separated by barriers lower than Inline graphic are clustered to define macrostates of the system. Their weight is indicated in the plot together with a representation of the physical state they represent, typically the particle located in a certain site where a bubble opens.