Table 1. Primers used in RT-PCR and DNA sequencing for Japanese encephalitis virus (JEV).

Primer name	Sequence 5′-3′	Primer used
JE-5UTRF	AGA AGT TTA TCT GTG TGA ACT TCT TGG	PCR, sequencing
JE-616R	CCT CAC ACA TGT AGC CGA CGT CT	Sequencing
JE-747R	TTC GCT TGG AAT GCC TGG TCC G	Sequencing
JE-747F	CGG ACC AGG CAT TCC AAG CGA A	Sequencing
JE-1448R	GGA AGC ATT GAC ACA TGT GCA AAA TT	PCR, sequencing
JE-1309F	AGA ACA ATC CAG CCA GAA AAC ATC	PCR, sequencing
JE-1360F	CGC TGA ATA ATT CCC ATG GTT TTC	Sequencing
JE-1839F	AGG CTG AAA ATG GAC AAA CTG GC	Sequencing
JE-1878R	GGT TGT GCC TTT CAG AGC CAG TTT	Sequencing
JE-2515R	ATC TCT TTT CTT GTG ATG TCA ATG GC	Sequencing
JE-2602R	AGG GAT CTG GGC GTT TCT GG	Sequencing
JE-2636R	GCC TTC CTT GTG CGC TTT GT	PCR, sequencing
JE-2340F	GGG AAT GTC TTG GAT CAC ACA AGG	PCR, sequencing
JE-2926F	TGG AAC AGC ATG CAA ATC GAA GA	Sequencing
JE-3032R	CCT ATG ATC GCT CCA TCA CAC TC	Sequencing
JE-3630R	GGT ACG GAA TGG AAA TCA GAC CTG	PCR, sequencing
JE-3467F	CAA TCT GGC CGT CCA CCT CTT GC	PCR, sequencing
JE-4169F	CCA CTA TAG CTG CCG GAC TAA TGG	Sequencing
JE-4324R	CTG CCA GCA TGA AGG GTA TTG AC	Sequencing
JE-4946R	TGG CAC ACA ACT AGA GGA GCA GC	PCR, sequencing
JE-4756F	GGT TTT GTC TGG ATG TTT ACT GC	PCR, sequencing
JE-4946F	GCA GTA AAC ATC CAG ACA AAA CC	Sequencing
JE-5424R	TGA CAT CAG TCT ATG GGT CAG AGT	Sequencing
JE-5424F	ACT CTG ACC CAT AGA CTG ATG TCA	Sequencing
JE-6096R	CCA TCC CCC ATA ACC AGT GCA AG	PCR, sequencing
JE-5946F	TAA CAT GAT CTT TGC CTC TGT CC	PCR, sequencing
JE-6096F	GGA CAG AGG CAA AGA TCA TGT TA	Sequencing
JE-6678F	GAT GCA GCG AAA GGG TAT AGG GAA	Sequencing
JE-6770R	GTT CCA GGA ACC TCT GCC GCC CA	Sequencing
JE-7388R	TGG ATG GCA AGC AGA AGC ACT CAG	PCR, sequencing
JE-7293F	ACA TCA GTG GCG ACC ATT CCG TC	PCR, sequencing
JE-7469F	CAT AGG GGT AAG CGT GGC AGC GTT	Sequencing
JE-7829F	GAG GAC ATC CGG TTT CGC GAG	Sequencing
JE-8030R	CTC TGC ATG AGC ATC GGT TCT TC	Sequencing
JE-8579R	GCG AAT GGA TCG CAC AGT GTG GAG	PCR, sequencing
JE-8403F	GGA TGC TCA GGG TCT TTG TGC CA	PCR, sequencing
JE-8579F	TGG CAC AAA GAC CCT GAG CAT CC	Sequencing
JE-9185R	GAA CAG AAT CAA TGG AGC ACA GC	Sequencing
JE-8926F	TCT CGG CTC AGC CAA TGG TCT TC	PCR, sequencing
JE-9185F	GAA GAC CAT TGG CTG AGC CGA GA	PCR, sequencing
JE-9719R	TCA AGA GAA GAC CAA AGG GGG AGT	Sequencing
JE-10266R	ATG GCG ATC AGC GGA GAC GAC T	PCR, sequencing
JE-9489F	CTG TGT CGT CAA GCC GCT GG	PCR, sequencing
JE-9664F	GTG GCG AAT CTG TCG TCC AGC GG	Sequencing
JE-9703F	GTG GTC ATC CAC TCT CCT TTC GAG	Sequencing
JE-10086R	CCA GAT GTC CTC ACG CTT TCC CAC	Sequencing
JE-10230R	GGT TGC TCT GGA TCG CGT TCC GAT	Sequencing
JE-10266F	ATC GGA ACG CGA TCC AGA GCA ACC	Sequencing
JE-10488F	ACT GGG TAG ACG GTG CTG CCT G	Sequencing
JE-10980R	AGA TCC TGT GTT CTT CCT CAC CAC	PCR, sequencing