Table 2. Chondrichthyan genome sequencing projects.
| Website | Genome
size (Gb) |
Coverage | Contigs | N50
(bp) |
Platform | Facility | Genbank | Data 1 | BioProject | BioSample | Date | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Holocephali | ||||||||||||
| Callorhinchus milii | esharkgenome | 0.910 | 19.25x | 21,203 | 1466 | Sanger
& 454 |
IMCB | AAVX02000000 | 244 M | PRJNA236996 | SAMN00000800 | 20-Dec-13 * |
| Elasmobranchii | ||||||||||||
| Leucoraja erinacea | skatebase.org | 3.42 | 26x | 2,62,365 | 665 | Illumina
PE |
NECC | AESE010000000 | 105 G | PRJNA60893 | SAMN00189066 | 22-Dec-11 |
| Scyliorhinus canicula | - | 3.5 | 32x | 3,449,662 | 1,292 | Illumina
PE |
Genoscope-CEA | - | - | - | - | - |
| Rhincodon typus | - | 3.44(est.) | 35x | Illumina
& 454 |
Emory University
& Georgia Aquarium |
- | - | PRJNA255419 |
SAMN02918461
SAMN02918462 |
16-Jul-14 | ||
1 (M) Mega or (G) Giga base pairs; (PE) paired end; (est) estimated; (ICMB) Institute of Molecular and Cell Biology, A*STAR, (NECC) North East Cyberinfrastructure Consortium
* replaced original sequence data GenBank AAVX00000000.1 (1.4x coverage) released 20-DEC-2006