Table 3. National Center for Biotechnology Information (NCBI) Expressed Sequence Tags (EST) and Genome Survey Sequences (GSS) databases (release 130101): Chondrichthyan sequence data.
| BioSample | BioSample Description | Library ID | Organism | Sample
age/sex |
Sample type | ESTs | Facility 1 | Date |
|---|---|---|---|---|---|---|---|---|
| Holocephali | ||||||||
| Chimaeriformes | ||||||||
| 182978 | Whole-genome shotgun library of the elephant shark (aka
elephant fish) |
GSS: LIBGSS_009694 | Callorhinchus milii | - | testis | 27944 | IMCB | 2004 |
| 1000678 | Elephant shark full- length cDNA library from testis | EST: LIBEST_027873 | Callorhinchus milii | - | testis | 29234 | IMCB | 2012 |
| 1000677 | Elephant shark full- length cDNA library from spleen | EST: LIBEST_027872 | Callorhinchus milii | - | spleen | 16664 | IMCB | 2012 |
| 1000676 | Elephant shark full- length cDNA library from liver | EST: LIBEST_027871 | Callorhinchus milii | - | liver | 16573 | IMCB | 2012 |
| 1000675 | Elephant shark full- length cDNA library from kidney | EST: LIBEST_027870 | Callorhinchus milii | - | kidney | 19246 | IMCB | 2012 |
| 1000674 | Elephant shark full- length cDNA library from intestine | EST: LIBEST_027869 | Callorhinchus milii | - | intestine | 12146 | IMCB | 2012 |
| 1000673 | Elephant shark full- length cDNA library from gills | EST: LIBEST_027868 | Callorhinchus milii | - | gills | 16012 | IMCB | 2012 |
| Elasmobranchii: Batoids (rays and skates) | ||||||||
| Torpediformes | ||||||||
| 158311 | Torpedo marmorata electric organ | EST: LIBEST_003755 | Torpedo marmorata | - | electric organ | 8 | CNRS | 2000 |
| 158310 | Torpedo marmorata electric lobe | EST: LIBEST_003754 | Torpedo marmorata | - | electric lobe | 26 | CNRS | 2000 |
| 157461 | pFL61-TEL | EST: LIBEST_002905 | Torpedo marmorata | - | electric lobe | 2 | CNRS | 2000 |
| 157406 | pFL61-EL | EST: LIBEST_002849 | Torpedo marmorata | - | electric lobe | 5 | CNRS | 2000 |
| 154382 | Torpedo californica electric organ | EST: LIBEST_020696 | Torpedo californica | - | electric organ | 10185 | Children’s National
Medical Center, USA |
2006 |
| Rajiformes | ||||||||
| 175126 | Little Skate Multiple Tissues, Normalized | EST: LIBEST_015890 | Leucoraja erinacea | adult | mixed a | 5698 | MDIBL | 2004 |
| 176484 | Little Skate Liver, Normalized | EST: LIBEST_017626 | Leucoraja erinacea | adult | liver | 6016 | MDIBL | 2005 |
| 165533 | Little Skate embryo cell line 1 (LEE-1): 5' sequences | EST: LIBEST_022984 | Leucoraja erinacea | embryonic
cell line |
stage 28 | 4825 | MDIBL | 2006 |
| 154366 | Little skate embryo tissues; 5' sequences | EST: LIBEST_020422 | Leucoraja erinacea | embryo | stage 19, 20, 25 | 5600 | MDIBL | 2006 |
| 166469 | Skate Multiple Tissues, Normalized | EST: LIBEST_023576 | Leucoraja erinacea | adult | mixed a | 9028 | MDIBL | 2008 |
| Elasmonbranchii: Selachii (sharks) | ||||||||
| Carcharhiniformes | ||||||||
| 168576 | Dogfish testis - round spermatids zone (SSH) | EST: LIBEST_025578 |
Scyliorhinus
canicula |
adult | testis | 20 | Caen University | 2009 |
| 168575 | Dogfish testis - spermatogonia zone (SSH) | EST: LIBEST_025577 |
Scyliorhinus
canicula |
adult | testis | 12 | Caen University | 2010 |
| 222714 | Scyliorhinus canicula juvenile library | EST: LIBEST_026904 |
Scyliorhinus
canicula |
juvenile | 5 days post-hatch | 56 | enoscope-CEA | 2011 |
| 222713 | Scyliorhinus canicula embryonic, stages 9–15 library | EST: LIBEST_026903 |
Scyliorhinus
canicula |
embryo | stages 9–15 | 628 | Genoscope-CEA | 2011 |
| 222712 | Scyliorhinus canicula embryonic, stages 19–25 library | EST: LIBEST_026902 |
Scyliorhinus
canicula |
embryo | stages 19–25 | 772 | Genoscope-CEA | 2011 |
| 222711 | Scyliorhinus canicula embryonic, stages 19–24 library | EST: LIBEST_026901 |
Scyliorhinus
canicula |
embryo | stages 19–24 | 33 | Genoscope-CEA | 2011 |
| 222710 | Scyliorhinus canicula adult brain library | EST: LIBEST_026900 |
Scyliorhinus
canicula |
adult | brain | 79 | Genoscope-CEA | 2011 |
| 699400 | cloudy catshark embryo cDNA library | EST: LIBEST_027410 |
Scyliorhinus
torazame |
embryo | stage 31 | 2942 | RIKEN | 2011 |
| Orectolobiformes | ||||||||
| 183175 | GC__Ba | GSS: LIBGSS_009945 |
Ginglymostoma
cirratum |
adult | red blood cells | 178 | University of
Arizona |
2005 |
| 184343 | shark whole genome shotgun library 2 | GSS: LIBGSS_011249 |
Chiloscyllium
plagiosum |
female | ventral fin | 177 | Tgen | 2008 |
| 184342 | shark whole genome shotgun library 1 | GSS: LIBGSS_011248 |
Chiloscyllium
plagiosum |
female | ventral fin | 194 | Tgen | 2008 |
| 166749 | Shark liver regeneration | EST: LIBEST_023789 |
Chiloscyllium
plagiosum |
adult | liver | 2103 | BGI | 2008 |
| 176026 | cDNA library of Shark hepatic regeneration tissues | EST: LIBEST_017019 |
Chiloscyllium
plagiosum |
none | Hour 24 after 2/3
partial hepatectomy |
17 | CPU | 2005 |
| 254067 | Toll like receptor ligand induced Spleen | EST: LIBEST_027180 |
Chiloscyllium
griseum |
male | spleen | 1051 | MVC | 2011 |
| 254066 | Spleen of Chiloscyllium griseum | EST: LIBEST_027179 |
Chiloscyllium
griseum |
male | spleen | 1000 | MVC | 2011 |
| 1797282 | Suppressive subtractive hybridization library from
peptidoglycan induced spleen of the shark |
EST: LIBEST_028031 |
Chiloscyllium
griseum |
male | spleen | 315 | MVC | 2012 |
| Squaliformes | ||||||||
| 175664 | Dogfish Shark Multiple Tissues, Normalized | EST: LIBEST_016552 | Squalus acanthias | adult | mixed b | 15078 | MDIBL | 2004 |
| 176998 | Dogfish Shark Embryo-derived Cell Line SAE, Normalized | EST: LIBEST_018195 | Squalus acanthias | embryonic
cell line |
embryo with
external yolk sac |
5824 | MDIBL | 2005 |
| 154362 | Spiny dogfish shark rectal gland EST library | EST: LIBEST_020417 | Squalus acanthias | - | rectal gland | 5085 | MDIBL | 2006 |
| 150616 | Dogfish Shark Rectal Gland, Normalized | EST: LIBEST_020023 | Squalus acanthias | adult | rectal gland | 6575 | MDIBL | 2006 |
| Hexanchiformes | ||||||||
| 178140 | Hexanchus griseus DNA (Hunter C) | GSS: LIBGSS_003277 |
Hexanchus
griseus |
- | - | 4 | HGMP-RC | 2001 |
1 (ICMB) Institute of Molecular and Cell Biology, A*STAR, (HGMP-RC) Human Genome Mapping Project Resource Centre, Hinxton, (Tgen) Translational Genomics Research Institute AZ, USA, (CNRS) National Center for Scientific Research, France, (MDIBL) Mount Desert Island Biological Laboratory, (CPU) China Pharmaceutical University, (MVC) Madras Veterinary College, TANUVAS, (BGI) Beijing Genomics Institute (SSH) Suppressive subtractive hybridization; (mixed a) liver, kidney, brain, testis, ovary, gill, heart, spleen, rectal gland; (mixed b) rectal gland, kidney, brain, testis, ovary, gill, intestine, heart, spleen