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. 2014 Aug 26;13(10):4377–4387. doi: 10.1021/pr500587x

Figure 3.

Figure 3

Analysis of identified synovial fluid proteins. (a) Identified proteins at 1% FDR sorted by PEP. Proteins unique to the transcriptome database (red squares) were, for the most part, identified with low confidence; hence, all proteins with PEP > 1 × 10–3 (red line) were removed from further analysis. (b) Synovial fluid proteins identified using the UniProt database and the transcriptome database fulfilling the filtering criteria. Of the 267 synovial fluid proteins, 140 had RPKM > 5 in the synovial mRNA libraries, indicating they are expressed by synovium.