Phytozome [27] |
http://www.phytozome.net |
Primary repository of Chlamydomonas genome/gene models. Bulk retrieval of annotation data. Structured to enable comparative genomics with other plants and algae. Contains user validated annotations, and PFAM, Panther and GO predicted annotations. |
UCLA algal genomics portal |
http://genomes.mcdb.ucla.edu/ |
Chlamydomonas genome browser. Repository for multiple transcriptomic datasets. |
Algal Annotation Tool [45] |
http://pathways.mcdb.ucla.edu/algal/index.html |
Batch conversion of gene identifiers. Bulk annotation prediction via Kegg, MapMan, GO, Panther, Metacyc. |
GIAVAP |
https://giavap-genomes.ibpc.fr/chlamydomonas |
Comparison of v5.5 gene predictions with previous versions, browser with BAC and fosmid ends. |
Iomiqs [29] |
http://iomiqsweb1.bio.uni-kl.de |
Bulk annotation prediction via MapMan with visual output. |
Predalgo [31] |
https://giavap-genomes.ibpc.fr/cgi-bin/predalgodb.perl?page=main |
Green algal-specific protein localization predictions. |
BioCyc [46] |
http://biocyc.org/CHLAMY/organism-summary |
Maps gene products onto metabolic pathways. |
Chlamydomonas Connection |
http://www.chlamy.org/ |
A Gateway to Resources for Chlamydomonas Research: news, methods, jobs, gene nomenclature etc. |
Chloroplast genome [47] |
http://www.chlamy.org/chloro |
Map and gene lists. |
Flagellar proteome [17] |
http://labs.umassmed.edu/chlamyfp/index.php |
Based on version 3, but lists JGIv4 equivalence; UMASS Amherst. |
Kazusa Institute [10] [11] |
http://est.kazusa.or.jp/en/plant/chlamy/EST |
Distributes cDNA clones corresponding to their EST collection. |
Chlamydomonas Resource Center |
http://chlamycollection.org/ |
Distributes strains, plasmids, cDNA libraries, kits etc. |
ChlamyStation |
http://chlamystation.free.fr/ |
Paris (IBPC) Collection of photosynthesis mutants. |
Transcription factors |
http://plntfdb.bio.uni-potsdam.de/v3.0/index.php?sp_id=CRE4 |
Part of the Plant Transcription Factor Database, University of Potsdam. |
Silencing RNAs [48] |
http://cresirna.cmp.uea.ac.uk/ |
from the Sainsbury Laboratory, D.C.Baulcombe group. |
Green Genie2 [49] |
http://stormo.wustl.edu/GreenGenie2/ |
Green genie gene models. |
Plant TFDB [50] |
http://planttfdb.cbi.pku.edu.cn/index.php?sp=Cre |
Database of Chlamydomonas transcription factors |