TABLE 3.
Comparison of relevant characteristics of Escherichia coli and Mycoplasma genitalium
Parameter | Value for species |
|
---|---|---|
Escherichia coli | Mycoplasma genitalium | |
Characteristics of species | ||
No. of ORFs | 4,325a | 482b |
No. of NCBI COGs | 2,131 | 362 |
No. of NCBI structure direct links | 1,096 | 6 |
DNA content (mg/ml cell vol)c | 13 | 100 |
Doubling time (h)d | 0.35 | 12 |
Species knowledge indexe | 47.5 | 1.53 |
Characteristics of in silico metabolic network reconstruction | ||
Model ID | iJO1366a | iPS189b |
No. of genes | 1,366 | 189 |
Overall accuracy of gene essentiality predictions (%) | 91 | 87 |
No. of reactions | 2,251 | 262 |
Metabolic | 1,473 | 178 |
Transport | 778 | 84 |
No. of unique metabolites | 1,136 | 274 |
No. of gene-associated reactions | 1,310 | 168 |
No. of spontaneous reactions | 25 | 6 |
No. of non-gene-associated reactions | 133 | 88 |