TABLE 2.

Globally diverse clinical M. abscessus isolates used for phylogenomic analyses

Subspeciesa	Isolate	Isolation date	Country of origin	Sequence accession no.b	Reference
MAB	ATCC 19977T	1957	France	NC_010397.1	34
MAB	6G0728	2003	USA	AKUS00000000	Unpublished
MAB	6G0125	2010	USA	AKUF00000000	Unpublished
MAB	3A0119R	2010	USA	AKUX01000000	Unpublished
MAB	3A0122R	2002	USA	AKUY00000000	Unpublished
MAB	V06705	2005	France	AUMY00000000	48
MAB	6a	2007	UK	ERR114968	8
MAB	7a	October 2007	UK	ERR115041	8
MAB	7b	October 2007	UK	ERR114965	8
MAB	7c	October 2007	UK	ERR114966	8
MAB	9a	November 2007	UK	ERR114986	8
MAB	9b	November 2007	UK	ERR115102	8
MAB	9c	December 2007	UK	ERR114974	8
MAB	9d	December 2007	UK	ERR115104	8
MAB	1b	2008	UK	ERR119107	8
MAB	23a	2010	UK	ERR115039	8
MAB	M152	NRc	Malaysia	AKVT00000000	49
MAB	M94	NR	Malaysia	AJGG00000000	50
MAB	M93	2010	Malaysia	AJGF00000000	51
MAB	9808	1998	China	ANAR00000000	Unpublished
MBOL	BD	2004	France	AHAS00000000	52
MBOL	M24	NR	Malaysia	AJLY00000000	53
MMAS	5S0304	1998	USA	AKTX00000000	Unpublished
MMAS	4S0116S	2008	USA	AKVE00000000	Unpublished
MMAS	4S0116R	2008	USA	AKVD00000000	Unpublished
MMAS	47J26	2009	UK	AGQU00000000	54
MMAS	CRM0020	2006	Brazil	ATFQ00000000	55
MMAS	19m	2010	UK	ERR115051	8
MMAS	M154	2010	Malaysia	AJMA00000000	20
MMAS	CCUG49998T	2004	France	AKVF00000000	56

^aMAB, M. abscessus subsp. abscessus; MBOL, Mycobacterium abscessus subsp. bolletii; MMAS, M. abscessus subsp. massiliense.

^bGenome sequences were obtained from the National Center for Biotechnology Information (NCBI) or the European Nucleotide Archive (ENA).

^cNR, not reported.