TABLE 2.

Summary of genes tested by microarray analysis and RT-qPCR

ORF	Expressiona		Gene	Protein name
	Microarray	qPCR
FTT0049	−1.08	−20.60	nusA	N utilization substance protein A
FTT0061	−7.14b	−2.93	atpH	ATP synthase delta chain
FTT0068		3.82c	sodB	Superoxide dismutase [Fe]
FTT0087	−2.30	8.30c	acnA	Aconitate hydratase
FTT0139	−1.92	−2.37	nusG	Transcription antitermination protein NusG
FTT0143	−2.93b	0.09	rplL	50S ribosomal protein L7/L12
FTT0144	−2.74	0.89	rpoB	DNA-directed RNA polymerase beta chain
FTT0192		−34.81	lysU	Lysyl-tRNA synthetase
FTT0330	−4.52b	−6.57	rplV	50S ribosomal protein L22
FTT0348	−4.65b	−15.78c	rpsK	30S ribosomal protein S11
FTT0380c	−4.65b	−3.28	gdh	NAD(P)-specific glutamate dehydrogenase
FTT0409	−4.12	−3.97	gcvP1	Glycine dehydrogenase subunit 1
FTT0709	−2.07	−2.91c	eno	Enolase (2-phosphoglycerate dehydratase)
FTT0918	−5.98	−13.03	fupA	Ferric uptake protein A (specific for the part present in FSC043)
FTT0963c	−2.51	1.17	aroG	Phospho-2-dehydro-3-deoxyheptonate aldolase
FTT1003c	1.08	−1.39	pheS	Phenylalanyl-tRNA synthetase
FTT1129		−17.62		Hypothetical protein FTT1129c
FTT1269c	−1.21	0.59	dnaK	Chaperone protein DnaK (heat shock protein family 70 protein)
FTT1275		−1.76	mglA	Macrophage growth locus subunit A
FTT1276		−1.45	mglB	Macrophage growth locus subunit B
FTT1344	1.65	6.26	pdpA	Pathogenicity determinant protein A
FTT1345	1.98	1.07	pdpB	Pathogenicity determinant protein B
FTT1346	1.31	1.74	iglE	Intracellular growth locus protein E
FTT1347	1.14	1.62	vgrG	Valine-glycine repeat G
FTT1348	1.40	1.70	iglF	Intracellular growth locus protein F
FTT1349	1.08	1.46	iglG	Intracellular growth locus protein G
FTT1350	1.10	1.75	iglH	Intracellular growth locus protein H
FTT1351		1.04	dotU	Defect in organelle trafficking U
FTT1352	1.04	2.01	iglI	Intracellular growth locus protein I
FTT1353	−1.01	−0.31	iglK	Intracellular growth locus protein K
FTT1354	−15.03b	−122.61c	pdpC	Pathogenicity determinant protein C
FTT1355	−1.08	−33.18c	pdpE	Pathogenicity determinant protein E
FTT1356	1.05	1.01	iglD	Intracellular growth locus protein D
FTT1357	−1.27	0.82	iglC	Intracellular growth locus protein C
FTT1358	−1.20	2.23	iglB	Intracellular growth locus protein B
FTT1359	1.03	2.03	iglA	Intracellular growth locus protein A
FTT1360	1.29	4.34	pdpD	Pathogenicity determinant protein D

^aFold regulation.

^bValue was significantly differentially expressed (see Materials and Methods).

^cValue was significantly differentially expressed (P < 0.02).