Table 2.
Percent nucleotide and deduced amino acid sequence (values shown in bracket) identities in the 579 bp coding region of the RT/RNase H of badnaviral isolates from different species of Piper from India
| Isolatesa | 1–29 | 30–31 | 34 | 32 | 33 | Other badnavirusesb |
|---|---|---|---|---|---|---|
| 1–29 | 85–100 (90–100) | 77–79 | 61–65 | 60–64 | 57–60 | 59–68 |
| 30–31 | (79–83) | 99 (99) | 64 | 62 | 59 | 59–69 |
| 34 | (60–65) | (65–66) | 100 (100) | 71 | 63 | 60–65 |
| 32 | (59–65) | (64–65) | (77) | 100 (100) | 59 | 58–66 |
| 33 | (54–59) | (57–58) | (60) | (58) | 100 (100) | 57–63 |
| Other badnavirusesb | (54–73) | (58–72) | (59–69) | (57–67) | (52–62) | 57–69 (52–73) |
Designation used for each of the isolates is given in Table 1
aFor details of isolates, refer to the Sl. No in Table 1. Isolates 1–17: nigrum-1 to nigrum-17; 18–19: betle-1 to betle-2; 20–21: longum-1 to longum-2; 22: attenuatum; 23: barberi; 24: colubrinum; 25: argyrophyllum; 26: galeatum; 27: ornatum; 28: sarmentosum; 29: trichostachyon; 30: bababudani; 31: chaba; 32: peepuloides; 33: mullesua and 34: thomsoni
bRetrieved from GenBank, their acronyms, accession numbers and full names are provided in Fig. 1