Table 1.
The genes with the top 10 most highly increased or decreased expression levels under submerged conditions when compared to A/L interface conditions at 24 h (A) or 48 h (B) after switching from culturing under A/L interface conditions. n=3 independent experiments.
A. | |||
---|---|---|---|
Gene Symbol | RefSeq | p-value (sub 24 hr vs. AL 24 hr) |
Fold-Change (sub 24 hr vs. AL 24 hr) |
Increased in Submerged at 24 h | |||
Fam70b | NM_001106094 | 1.08E-11 | 75.0466 |
Th | NM_012740 | 3.88E-10 | 27.6918 |
Dock6 | NM_001108997 | 4.73E-09 | 21.2716 |
Osap | NM_001109556 | 7.10E-08 | 14.3145 |
Stc1 | NM_031123 | 9.23E-08 | 12.5598 |
Tmem213 | ENSRNOT00000018331 | 9.69E-06 | 12.3558 |
Atp6v0a4 | NM_001106591 | 3.46E-06 | 11.1214 |
Car9 | NM_001107956 | 3.40E-06 | 10.7408 |
Hcrtr1 | NM_013064 | 8.59E-11 | 9.60985 |
Eno2 | NM_139325 | 1.24E-06 | 9.15644 |
Decreased in Submerged at 24 h | |||
Lgi3 | NM_001107277 | 1.96E-05 | −7.87171 |
Aqp5 | NM_012779 | 0.00285439 | −7.08992 |
Angptl1 | NM_001109383 | 1.27E-06 | −6.77331 |
Retnla | NM_053333 | 1.47E-06 | −6.01563 |
Kcne2 | NM_133603 | 6.57E-05 | −5.96204 |
Akr1c14 | NM_138547 | 4.54E-05 | −5.94269 |
Slc43a3 | NM_001107743 | 0.00027989 | −5.53856 |
Brms1l | NM_001106731 | 7.21E-07 | −5.19932 |
Accn2 | NM_024154 | 0.00033784 | −4.89753 |
Akr1cl1 | NM_001109900 | 0.00469004 | −4.58958 |
B. | |||
Gene Symbol | RefSeq | p-value (sub 48 hr vs. AL 48 hr) |
Fold-Change (sub 48 hr vs. AL 48 hr) |
Increased in Submerged at 48 h | |||
Fam70b | NM_001106094 | 2.33E-10 | 33.8273 |
Th | NM_012740 | 1.06E-08 | 14.0543 |
Osap | NM_001109556 | 1.89E-07 | 11.883 |
Car9 | NM_001107956 | 4.14E-06 | 10.3389 |
Stc1 | NM_031123 | 3.41E-07 | 9.92379 |
Dock6 | NM_001108997 | 2.93E-07 | 9.65169 |
Fxyd4 | NM_022388 | 2.60E-06 | 9.30901 |
Ankrd34c | NM_001106845 | 1.98E-07 | 7.48247 |
Eno2 | NM_139325 | 5.54E-06 | 7.10802 |
Mmp13 | NM_133530 | 2.54E-06 | 6.94723 |
Decreased in Submerged at 48 h | |||
Retnla | NM_053333 | 4.83E-11 | −42.222 |
Lgi3 | NM_001107277 | 1.83E-06 | −12.4042 |
Slc43a3 | NM_001107743 | 4.28E-06 | −12.3659 |
Aqp5 | NM_012779 | 0.000536135 | −11.0382 |
Angptl1 | NM_001109383 | 1.59E-07 | −9.4264 |
Akr1c14 | NM_138547 | 2.11E-05 | −6.75691 |
Cyp2f4 | NM_019303 | 0.00153741 | −6.44771 |
Brms1l | NM_001106731 | 1.83E-07 | −6.23451 |
Accn2 | NM_024154 | 0.000104286 | −5.99548 |
Pde7b | NM_080894 | 0.00452271 | −5.21055 |