Table 2.
Gene annotation and coding sequences reconstruction using BLASTX to OMA browser mouse protein database
| Minimum % of CDS reconstructed | Range (of individual libraries) | DigiNorm | Multireads | TrinityNorm | Library union | ||
|---|---|---|---|---|---|---|---|
| min | max | ||||||
| Genes | 99 | 3090 (3102) | 5021 (5037) | 5211 (5245) | 7017 (7053) | 5895 (5926) | 7060 (7131) |
| Contigs | 4371 | 7763 | 15815 | 14881 | 13671 | n/a | |
| Genes | 90 | 4534 (4557) | 6882 (6916) | 7354 (7436) | 9467 (9543) | 8252 (8325) | 9290 (9434) |
| Contigs | 6861 | 11361 | 26904 | 22137 | 21825 | n/a | |
| Genes | 80 | 5706 (5745) | 8636 (8636) | 8530 (8665) | 10377 (10480) | 9347 (9467) | 10104 (10367) |
| Contigs | 5422 | 14129 | 36814 | 26745 | 28270 | n/a | |
| Genes | 50 | 8025 (8138) | 9905 (10089) | 12261 (12610) | 12587 (12818) | 12498 (12769) | 11874 (12544) |
| Contigs | 14168 | 25674 | 76156 | 40607 | 51140 | n/a | |
| Total genes | 11564 (11941) | 12988 (13434) | 15095 (15717) | 14788(15204) | 15077 (15605) | 14618 (15772) | |
| Total contigs | 32934 | 55332 | 157390 | 70380 | 100786 | n/a | |
The first value indicates the number of mouse genes found (for which at least one coding sequence was reconstructed). Values in parenthesis are the number of distinct coding sequences reconstructed at each level. The row corresponding to “contigs” indicates the number of contigs that reconstructed coding sequences (CDS) at each level.