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Imputation accuracy of variants plotted against the minor allele frequency. Imputation accuracy of variants on chromosome 1 (A) and chromosome 29 (B) for HOL20 (dotdash line), MIX80 (dotted line), HOL80 (dashed line), and MIX140 (solid line) plotted against the minor allele frequency (MAF) in Holstein. The lines were fitted with a generalized additive model with integrated smoothness estimation using the imputation accuracy over all 5 cross-validations.
