Table 2.

Average imputation accuracy (r) of SNP and short insertions and deletions (indels) on chromosome 1 and 29

	Chromosome 1				Chromosome 29
	SNP (1,069,830)		Indels (76,351)		SNP (405,507)		Indels (26,210)
Scenario	n	r	n	r	n	r	n	r
HOL20	630,092	0.71	42,324	0.56	238,473	0.60	14,323	0.47
MIX80	646,872	0.84	44,023	0.71	252,571	0.75	15,370	0.64
HOL80	646,796	0.88	44,027	0.76	252,439	0.81	15,374	0.70
MIX140	647,200	0.89	44,051	0.78	252,996	0.83	15,403	0.73