Table 1. Bacterial strains and vectors used in this study.
Strain/Vector | Relevant characteristic or genotype | Source or reference |
E. coli EPI300-T1R | F-mcrA Δ(mrrhsdRMSmcrBC) φ80dlacZΔM15ΔlacX 74 recA1 endA1 araD139 Δ(ara, leu) 7697galU galK λ- rpsL nupG trfA tonA dhfr | Epicentre |
E. coli 20G8 | Fosmid 20G8 cloned in EPI300-T1R; Cmr | This study |
E. coli 20G8vioA- | Fosmid 20G8 mutated in vioA gene and cloned in EPI300-T1R; Cmr, Kanr | This study |
E. coli 20G8vioB- | Fosmid 20G8 mutated in vioB gene and cloned in EPI300-T1R; Cmr, Kanr | This study |
E. coli 20G8vioC- | Fosmid 20G8 mutated in vioC gene and cloned in EPI300-T1R; Cmr, Kanr | This study |
E. coli 20G8vioD - | Fosmid 20G8 mutated in vioD gene and cloned in EPI300-T1R; Cmr, Kanr | This study |
E. coli OP50 | Uracil auxotroph | [29] |
Microbulbifer sp. D250 | Wild type strain | [62] |
Microbulbifer sp. D250 dv2 | D250 strain mutated in vioB gene; Kanr | This study |
pLof/Tn10 KM | Mini-Tn10 (Kanr); Amp r | [34] |
pCC1FOSa | Fosmid backbone for genomic library; Cmr | Epicentre |
Copy number inducible by arabinose.