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Correlation between allelic dosages obtained by GIGI+BEAGLE and the true genotypes (x-axes) versus correlation between allelic dosages obtained by: BEAGLE (first row figures), GIGI (second row figures), and the MAX between the correlations obtained by GIGI and BEAGLE (third row figures) with the true genotypes (y-axes). A) LowLD pattern, B) HighLD pattern. Left part of every LD pattern column figures: MAF>0.01; Right part of every LD pattern column figures: MAF<=0.01.
