. Author manuscript; available in PMC: 2015 Nov 1.

Published in final edited form as: Genet Epidemiol. 2014 Aug 1;38(7):579–590. doi: 10.1002/gepi.21844

Table 1.

Type I error of of association tests: famSKAT-RC, famCMWS, famSKAT, and famSKAT-B under the LowLD pattern in the sequence data. A is the number of associated SNPs and f_c is the proportion of common SNPs.

A	f_c	famSKAT-RC			famCMWS	famSKAT-B	famSKAT
A	f_c	ϕ =0.5	ϕ =0.3	ϕ = ^$	famCMWS	famSKAT-B	famSKAT
10	0.3	0.0085	0.0082	0.0087	0.0099	0.0100	0.0100
10	0.7	0.0100	0.0087	0.0094	0.0114	0.0086	0.0098

20	0.3	0.0092	0.0084	0.0090	0.0092	0.0106	0.0123
20	0.7	0.0094	0.0113	0.0096	0.0110	0.0101	0.0094

ϕ = sd(Qrare)/(sd(Qrare)+sd(Qcommon))