Table 2.
Analyzed polymorphisms within AREG and EREG
| Gene SNP | Allele | MAF | Function | Forward (F) and Reverse (R) primer |
|---|---|---|---|---|
| AREG rs161511 | G>A | 7% | splicing regulation | F: 5′-TCTCCACTCGCTCTTCCAAC-3′ R: 5′-CCTCACCTGAGCCGAGTATC-3′ |
| AREG rs28364983 | T>C | 23% | transcriptional regulation | F: 5′-ATGGCTGTTACCCCT GTGAG-3′ R: 5′-GGGGGCTTAACTACCTGTTCA-3′ |
| AREG rs1691263 | C>T | 25% | unknown | F: 5′-AAAAAGGGAGGCAAAAATGG-3′ R: 5′-CCTGCAGTTAGGGGTTTCAG-3′ |
| AREG rs2291715 | A>C | 32% | splicing regulation, transcriptional regulation | F: 5′-AAAACACACCGCACGTTTTT-3′ R: 5′-AACAGCAACAGCTGTGAGGA-3′ |
| EREG rs10446508 | A>T | 36% | transcriptional regulation | F: 5′-CCCCCAAAACTCTTCTACCTTT-3′ R: 5′-CAGCCCATGGAAATATAGGG-3′ |
| EREG rs1962685 | C>T | 25% | transcriptional regulation | F: 5′-CTCCCAAACTGCTGGGATTA-3′ R: 5′-GGGCACAGATGTTCAAGTCA-3′ |
| EREG rs2061509 | C>T | 31% | transcriptional regulation | F: 5′-TCCTTAGAAGGGAGGAAGGAA-3′ R: 5′-GGGATGAAGAGGTGATGTGC-3′ |
| EREG rs7687621 | C>T | 17% | transcriptional regulation | F: 5′-TGATGTGGTTTCCTCAAAGC-3′ R: 5′-ATAATGTGCCCAAGGTCCAA-3′ |
| EREG rs12641042 | C>A | 46% | transcriptional regulation | F: 5′-TCCAGTCAGAAACCATGCAA-3′ R: 5′-CACAGTGCAAGTCTGCTGGTA-3′ |
| EREG rs7575690 | T>C | 15% | transcriptional regulation | F: 5′-CTGCATGATTTCCAGGATTG-3′ R: 5′-TGCCTACCTCCAAATTCAACA-3′ |
AREG = amphiregulin; EREG = epiregulin, MAF = minor allele frequency (Japanese ethnicity), T= thiamine, C= cysteine, A= adenine, G= guanine