Table 4.
Primer sets used for PCR amplification of F and HN genes of Ugandan NDV isolates
Gene | Forward primer (5′ to 3′) | Reverse primer (5′ to 3′) | PCR product (bp) |
---|---|---|---|
F | NDVF1F1: GCAAGATGGGCYCCAAACC | NDVF1R2: CATCTTCCCAACTGCCACT | 550 |
NDVF2F2: GACCACTTTACTCACTCCTC | NDVF2R1: GTAGGTGGCACGCATATTATT | 642 | |
NDVF3F2: CGACTCACAGACTCAACTC | NDVF3R2: TATARGTAATRAGRGCRGATG | 685 | |
NDVF4F2: GCAAGATRACAACATGTAGRTG | NDVF4R2: CTTGGCTAACYGCRCGGTCCAT | 709 | |
HN | NDVHN1F2: GGCTTCMCAACATCCGTTCTAC | NDVHN1R2: GAATGYGAGTGATCTCTGCA | 652 |
NDVHN2F2: CATGAGYRCTACCCAYTACTG | NDVHN2R2: GATAGATAAGATGGCYTGCTG | 591 | |
NDVHN3F2: GGGTGGCAAAYTACCCAGGAG | NDVHN3R2: GTATTGGATATTTCRGCAATGC | 768 | |
NDVHN4F2: GCATACACGACATCGACATG | NDVHN4R2: CGGTARCCCAGTYAATTTCCA | 513 |