Table 1.
Genetic diversity estimators for pv41
| n | Sites | Ss | S | Ps | H | θ w | k | π |
|---|---|---|---|---|---|---|---|---|
| Worldwide diversity | ||||||||
| 36 | 1,068 | 17 | 5 | 12 | 13 | 0.0038 ± 0.0009 | 3.9 | 0.0037 ± 0.0006 |
| Local diversity | ||||||||
| 30 | 1,115 | 10 | 1 | 9 | 10 | 0.0023 ± 0.0007 | 3.1 | 0.0028 ± 0.0005 |
The estimators of genetic diversity were calculated by using the sequences obtained from the databases plus the Colombian ones (worldwide diversity) and just using those obtained in the Colombian population (local diversity).
n: number of isolates, sites: total of sites analysed (excluding gaps), Ss: number of segregant sites, S: number of singleton sites, Ps: number of parsimony-informative sites, H: number of haplotypes, k: average number of nucleotide differences by sequence pairs, θw: Watterson estimator, π: nucleotide diversity per site.