. Author manuscript; available in PMC: 2015 Mar 1.

Published in final edited form as: Nat Genet. 2014 Aug 3;46(9):994–1000. doi: 10.1038/ng.3052

Table 3.

Conditional analyses of SNPs at chromosomes 5p15.33 and 9q34.2

New SNP	Chr	Position^a	Gene	OR^b	P^b	Conditional OR^c	Conditional P^c	Established SNP	r²,^d	OR^e	P^e	Conditonal OR^f	Conditional P^f
rs2736098	5p15.33	1,294,086	TERT, CLPTM1L	0.80 (0.74–0.86)	1.42 × 10⁻⁹	0.88 (0.80–0.95)	2.44 × 10⁻³	rs401681 / rs31490	0.22	0.83 (0.79–0.88)	1.97 × 10⁻¹¹	0.86 (0.81–0.92)	7.55 × 10⁻⁶
rs4962153	9q34.2	136,323,754	ADAMTS13, ABO	1.20 (1.10–1.30)	1.97 × 10⁻⁵	1.05 (0.96–1.16)	0.28	rs505902 / rs687289	0.17	1.27 (1.20–1.35)	1.64 × 10⁻¹⁶	1.25 (1.18–1.33)	6.28 × 10⁻¹²

Position of SNP in NCBI genome build 37 (Hg19).

Per-allele ORs for the minor allele and P values for the new SNP from the unconditional meta-analysis of Stage 1 and Stage 2.

Per-allele ORs for the minor allele and P values for the new SNP from the conditional meta-analysis.

r² LD values between the new SNP and the established SNP at the locus based on 1000 Genomes Project CEU data.

Per-allele ORs for the minor allele and P values for the established SNP from the unconditional meta-analysis of Stage 1 and Stage 2.

Per-allele ORs for the minor allele and P values for the established SNP from the conditional meta-analysis.

Chr: chromosome.