Table 1.
HetR ChIP-seq peak regions a
| Chromosomal coordinates | Length base pairs | Gene to left | Fold change expression in ∆ hetR 6 h | Gene to right | Fold change expression in ∆ hetR 6 h | HetR binding site |
|---|---|---|---|---|---|---|
| 0136127..0136558 | 431 | all0131 | Low coverage | alr0132 | −1.1 | Yes |
| 0613436..0613919 | 483 | patA (all0521) | −8.0 | alr0522d | −5.6 | Yes |
| 1729122..1729569 | 447 | all1467 | 1.4 | alr1468 | Low coverage | Yes |
| 1732738..1733693 | 955 | asr1469c | 1.7 | alr1470 | −3.1 | Yes |
| 1734763..1735224 | 461 | all1471 | −2.3 | all1472c | −1.6 | Yes |
| 1788499..1788932 | 433 | alr1527 | −5.8 | alr1528d | NAb | Yes |
| 2427714..2428147 | 433 | all2027 | 3.8 | asl2028 | −1.5 | Yes |
| 2691579..2692024 | 445 | all2239 | −4.0 | alr2240 | −7.1 | Yes |
| 2820376..2822006 | 678 | alr2338c | −4.4 | hetR (alr2339) | −131 | Yes |
| 3431297..3432038 | 741 | hetC (alr2817)c | NA | hetP (alr2818) | −4.4 | Yes |
| 3627499..3627977 | 478 | alr2986c | −3.0 | alr2987d | NA | Yes |
| 3695599..3696450 | 851 | asr3053c | 2.1 | all3054d | NA | Yes |
| 3821175..3821606 | 431 | alr3156c | NA | aphA (alr3157) | −7.7 | Yes |
| 4383426..4383866 | 440 | avaIR (all3631)d | −1.3 | avaIM (all3632)c | −1.9 | Yes |
| 4539927..4540364 | 437 | alr3757c | NA | alr3758 | 11 / 0 | Yes |
| 4740704..4741151 | 447 | alr3926c | NA | all3927c | −2.9 | Yes |
| 5064797..5065242 | 445 | asr4228c | NA | alr4229 | −7.5 | Yes |
| 5303024..5303480 | 456 | all4424 | 5.2 | all4425c | 1.7 | Yes |
| 5309952..5310383 | 431 | all4430 | 4.9 | all4431c | 10.3 | Yes |
| 5355615..5356047 | 432 | alr4469c | −1.3 | asr4470 | −10.8 | Yes |
| 0374646..0375090 | 444 | all0326 | Low coverage | all0327c | NA | No |
| 2274728..2275590 | 862 | alr1903c | −4.9 | cyaB2 (all1904)c | NA | No |
| 2693489..2693944 | 455 | alr2241c | NA | alr2242 | −13.4 | No |
| 2706756..2707187 | 431 | gvpA (asl2254) | −6.3 | asr2255 | Low coverage | No |
| 4857231..4857672 | 441 | alr4031c | NA | alr4032 | Low coverage | No |
| 6129044..6129475 | 431 | all5131 | −4.2 | all5132c | −2.5 | No |
aSee text for details on peak selection criteria. If no footnote for gene, then ChIP peak region is within 500 bp upstream of ORF.
bNA, not applicable because ChIP peak region is unlikely to regulate ORF expression.
cChIP peak region is downstream of potential TSS.
dChIP peak region is >500 bp upstream of ORF.