Skip to main content
. 2014 Oct 10;9(10):e110377. doi: 10.1371/journal.pone.0110377

Figure 1. The SNP selection workflow.

Figure 1

The SNP selection process was a cascade involving four steps: Detection, Quality Filtering, Illumina specific Filtering and SNP Selection, with the number of SNPs reduced after each step. The specific filtering criteria have been reported for each filtering stage, as well as the number of resulting SNPs, with the corresponding percentage survival, relative to the total number of SNP markers after the previous step. From the 20,000 selected, Illumina successfully incorporated a total of 18,019 SNP probes into the new array, 14,714 of which were newly discovered and 3,305 previously validated.