Table 1. Prediction of the Transmembrane Domain of the ADCK3 Homologs.
name | sequence | ΔGOcta | ΔGAppb | TMPREDc | Phobiusd | TMHMMe | ΔG predictorf | MemBraing | E(z)h |
---|---|---|---|---|---|---|---|---|---|
ADCK3 | LANFGGLAVGLGFGALA | –0.28 | +2.11 | yes | 50% | no | yes (+1.80) | possible (70%) | no |
ADCK4 | LANFGGLAVGLGLGVLA | –0.78 | +1.91 | yes | 90% | 40% | yes (+1.69) | yes (80%) | no |
Wimley–White octanol scale (kcal/mol).81
Phobius78,79 at http://phobius.sbc.su.se.
ΔG predictior80 at http://dgpred.cbr.su.se (in paretheses the ΔGApp for the predicted TM segment, kcal/mol).
MemBrain74,75 at http://www.csbio.sjtu.edu.cn/bioinf/MemBrain.
E(z) potential73 at http://ez.degradolab.org/ez/original.