Table 2.
Changes in expression level of the genes involved in the JH signal transduction pathway
| Gene | RNA-Seq ID | L5D6-RPKM | PP-RPKM | P0-RPKM | L5D6 vs PP | PP vs P0 |
|---|---|---|---|---|---|---|
| Met1 | Bm_nscaf2828_039 | 45.41 | 11.65 | 8.92 | -1.96* | - |
| Met2 1 | Bm_nscaf1690_114 | 1.42 | none | none | - | → |
| Bm_nscaf1690_115 | 1.85 | 1.64 | 0.19 | - | - | |
| SRC 1 | Bm_nscaf3078_04 | none | 3.35 | none | + | - |
| Bm_nscaf3078_05 | 8.99 | 10.38 | 3.22 | + | -1.69 * | |
| Kr-h1 | Bm_nscaf2589_179 | 95.84 | 2.77 | 1.77 | -5.11 * | - |
1These genes have more than one RNA-Seq sequences. Expression level of the genes was calculated by RPKM method. "none" means that the expression of the genes was not detected. "+" represents up-regulation, "-" represents down-regulation, and "→" represents no change. Asterisks indicate the gene, whose expression level had more than two folds difference between two stages and False Discovery Rate (FDR) was less than 0.001, was identified as differentially expressed at this developmental stage. And the values in the last two columns were calculated by Log2(PP-RPKM/L5D6-RPKM) or Log2(P0-RPKM/PP-RPKM) and only those differentially expressed genes are given.