Table 2.
List of the 96 selected SNPs
| SNP ID | Chr_position | p | q | F ST | Pop 1 ID | Pop 2 ID |
|---|---|---|---|---|---|---|
| 5812b* | I_14574103 | C | T | 0.18 | Hadsten | Mariager |
| 27027* | II_13068160 | A | G | 0.00 | Hadsten | Mariager |
| 1800* | II_19830429 | G | T | 0.12 | Hadsten | Mariager |
| 1139* | III_9900776 | C | T | 0.03 | Hadsten | Mariager |
| 2620* | IV_10499598 | C | T | 0.07 | Hadsten | Mariager |
| 11120* | V_10474117 | C | T | 0.14 | Hadsten | Mariager |
| 9990* | VI_10404859 | C | T | 0.06 | Hadsten | Mariager |
| 10561* | VI_2863536 | A | G | 0.01 | Hadsten | Mariager |
| 9202* | VII_22894561 | A | G | -0.12 | Hadsten | Mariager |
| 35752* | VII_4229364 | A | G | 0.05 | Hadsten | Mariager |
| 7275* | VIII_11705544 | C | T | 0.00 | Hadsten | Mariager |
| 28703* | VIII_14145458 | A | C | -0.05 | Hadsten | Mariager |
| 4390* | IX_10719826 | A | G | -0.04 | Hadsten | Mariager |
| 16548* | XI_11232372 | G | T | -0.01 | Hadsten | Mariager |
| 13177* | XII_10200557 | C | T | -0.11 | Hadsten | Mariager |
| 14236* | XIV_10623162 | A | G | 0.04 | Hadsten | Mariager |
| 15044* | XIV_7617082 | C | T | -0.07 | Hadsten | Mariager |
| 20574* | XV_10990137 | A | G | -0.01 | Hadsten | Mariager |
| 20825* | XV_14641595 | C | T | -0.01 | Hadsten | Mariager |
| 31954* | XVII_1792778 | A | T | -0.03 | Hadsten | Mariager |
| 15728* | XIX_1761203 | C | G | -0.01 | Hadsten | Mariager |
| 22319* | XX_12299466 | A | G | 0.18 | Hadsten | Mariager |
| 32977* | XX_15123750 | A | C | -0.04 | Hadsten | Mariager |
| 21643* | XXI_10893532 | C | G | 0.05 | Hadsten | Mariager |
| 21858* | XXI_4924010 | A | G | -0.10 | Hadsten | Mariager |
| 33523* | Scaffold_122_287328 | G | T | 0.09 | Hadsten | Mariager |
| 5812 | I_14574107 | C | T | 0.50 | Hald | Mariager |
| 5939 | I_16513837 | C | T | 0.57 | Hadsten | Mariager |
| 28321 | I_21607623 | C | T | 0.27 | Hald | Mariager |
| 28526 | I_4931967 | A | C | 0.89 | Hadsten | Mariager |
| 6844 | I_4932075 | A | T | 0.85 | Hadsten | Mariager |
| 1955 | II_22061028 | G | T | 0.81 | Hadsten | Mariager |
| 2113 | II_3125972 | A | C | 0.80 | Hadsten | Mariager |
| 2114 | II_3182440 | A | G | 0.72 | Hadsten | Mariager |
| 276 | III_13446716 | A | G | 0.67 | Hadsten | Mariager |
| 3231 | IV_20387384 | T | C | 0.71 | Hadsten | Mariager |
| 3644 | IV_29334535 | A | G | 0.70 | Hadsten | Mariager |
| 27608 | IV_29334612 | A | T | 0.78 | Hadsten | Mariager |
| 3851 | IV_3216905 | A | T | 0.70 | Hadsten | Mariager |
| 4073 | IV_5292424 | A | C | 0.40 | Hadsten | Mariager |
| 27768 | IV_6660266 | A | T | 0.77 | Hadsten | Mariager |
| 27791 | IV_8128962 | G | T | 0.70 | Hadsten | Mariager |
| 29903 | V_8795372 | A | G | 0.65 | Hadsten | Mariager |
| 10131 | VI_12603660 | G | T | 0.68 | Hadsten | Mariager |
| 8466 | VII_11202861 | A | G | 0.61 | Hadsten | Mariager |
| 9026 | VII_19985290 | C | G | 0.79 | Hadsten | Mariager |
| 9206 | VII_22946194 | A | G | 0.91 | Hadsten | Mariager |
| 7745 | VIII_17638021 | C | T | 0.82 | Hadsten | Mariager |
| 7807 | VIII_18320215 | A | G | 0.67 | Hadsten | Mariager |
| 7808 | VIII_18320304 | A | G | 0.76 | Hadsten | Mariager |
| 8351 | VIII_9101385 | A | G | 0.52 | Hadsten | Mariager |
| 4521 | IX_13007542 | G | T | 0.40 | Hadsten | Mariager |
| 5200 | IX_5019009 | C | T | 0.78 | Hadsten | Mariager |
| 5238 | IX_5337004 | C | G | 0.77 | Hadsten | Mariager |
| 23341 | X_11668366 | C | G | 0.36 | Hadsten | Mariager |
| 33387 | X_6967185 | A | C | 0.26 | Hadsten | Mariager |
| 16649 | XI_12761116 | C | T | 0.69 | Hadsten | Mariager |
| 16691 | XI_13340957 | C | T | 0.70 | Hadsten | Mariager |
| 31479 | XI_9810247 | C | T | 0.50 | Hadsten | Mariager |
| 13340 | XII_12843029 | A | G | 0.78 | Hald | Mariager |
| 13682 | XII_18204005 | C | T | 0.68 | Hadsten | Mariager |
| 13744 | XII_3061560 | A | G | 0.60 | Hadsten | Mariager |
| 30542 | XII_8981405 | C | T | 0.39 | Hadsten | Mariager |
| 14188 | XII_9924630 | A | G | 0.54 | Hadsten | Mariager |
| 11996 | XIII_11719547 | C | T | 0.47 | Hadsten | Mariager |
| 19976 | XVI_18491 | C | T | 0.47 | Hadsten | Mariager |
| 20063 | XVI_3012006 | C | T | 0.24 | Hadsten | Mariager |
| 35236 | XVI_5021761 | C | T | 0.54 | Hadsten | Mariager |
| 20222 | XVI_565127 | C | T | 0.54 | Hadsten | Mariager |
| 20238 | XVI_593641 | C | T | 0.89 | Hadsten | Mariager |
| 18651 | XVII_11584572 | C | T | 0.68 | Hadsten | Mariager |
| 18814 | XVII_13715805 | A | G | 0.70 | Hadsten | Mariager |
| 32060 | XVII_7058248 | C | T | 0.49 | Hald | Mariager |
| 17506 | XVIII_10340214 | A | G | 0.63 | Hadsten | Mariager |
| 17577 | XVIII_11202384 | G | T | 0.49 | Hadsten | Mariager |
| 17787 | XVIII_14143185 | A | C | 0.76 | Hadsten | Mariager |
| 18047 | XVIII_3081169 | A | T | 0.26 | Hadsten | Mariager |
| 18262 | XVIII_6321841 | C | T | 0.77 | Hadsten | Mariager |
| 15358 | XIX_11929930 | A | G | 0.62 | Hadsten | Mariager |
| 30997 | XIX_16674218 | A | T | 0.69 | Hadsten | Mariager |
| 30997b | XIX_16674221 | C | G | 0.68 | Hadsten | Mariager |
| 15971 | XIX_3850285 | G | T | 0.48 | Hadsten | Mariager |
| 31101 | XIX_5560633 | C | T | 0.72 | Hadsten | Mariager |
| 22229 | XX_10890902 | A | G | 0.50 | Hald | Mariager |
| 32994 | XX_15998772 | C | T | 0.53 | Hadsten | Mariager |
| 22693 | XX_17936432 | A | G | 0.93 | Hadsten | Mariager |
| 23102 | XX_7553459 | A | C | 0.56 | Hadsten | Mariager |
| 21688 | XXI_11538922 | C | T | 0.65 | Hadsten | Mariager |
| 21693 | XXI_11580802 | A | G | 0.69 | Hadsten | Mariager |
| 22037 | XXI_8170313 | A | T | 0.71 | Hadsten | Mariager |
| 24457 | Scaffold_122_232322 | A | G | 0.83 | Hadsten | Mariager |
| 25425 | Scaffold_27_3893488 | C | T | 0.59 | Hadsten | Mariager |
| 33942 | Scaffold_309_4735 | A | G | 0.51 | Hadsten | Mariager |
| 26062 | Scaffold_58_401854 | A | C | 0.57 | Hadsten | Mariager |
| 26071 | Scaffold_58_511232 | C | T | 0.45 | Hadsten | Mariager |
| 26405 | Scaffold_76_220535 | C | T | 0.59 | Hadsten | Mariager |
The 26 putatively neutral SNPs are indicated by asterisks (*) following the SNP IDs. Chr_position denotes the position of the SNPs in the threespine stickleback genome [13]. p and q are the two alleles found at the SNP position. FST denotes differentiation at the SNPs between population 1 and population 2.