Table 4. UV melting points and hyperchromicities of dodecamer duplexes.
Probe | Target sequence | Tma (°C) | ΔTm 1 Mb (°C) | Hyperchromicityc (%) | |
---|---|---|---|---|---|
[salt] = 100 mM | [salt] = 1 M | ||||
AATTTCTTTCTT | AAGAAAGAAATT | 38.4 ± 0.3 | 42.1 ± 0.6 | – | 30.9 ± 0.2 |
19 | AAGAAAGAAATT | 48.4 ± 0.6 | 53.2 ± 0.5 | +11.1 | 22.6 ± 0.2 |
TTTTTCTTTCTT | AAGAAAGAAAAA | 35.6 ± 0.9 | 37.3 ± 0.9 | – | 30.4 ± 0.5 |
20 | AAGAAAGAAAAA | 47.7 ± 0.3 | 52.9 ± 0.3 | +15.6 | 29.3 ± 1.2 |
24 | AAGAAAGAAAAA | 45.0 ± 0.9 | 46.3 ± 0.9 | +9.0 | 26.1 ± 1.1 |
TTTTTCTTTCTT | CGAAAGAAAGAAAAAAGC | 38.2 ± 0.2 | 42.1 ± 0.4 | – | 26.2 ± 0.8 |
20 | CGAAAGAAAGAAAAAAGC | 48.7 ± 0.3 | 53.7 ± 0.4 | +11.6 | 30.9 ± 1.5 |
aAverage of four melting points ± SD at 1.6 µM strand concentration and 10 mM PIPES buffer, 10 mM MgCl2 and NaCl concentration given.
bMelting point difference to fully complementary duplex.
cHyperchromicity upon duplex dissociation at 260 nm.