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. 2004 May 20;32(9):2901–2911. doi: 10.1093/nar/gkh600

Table 4. UV melting points and hyperchromicities of dodecamer duplexes.

Probe Target sequence Tma (°C) ΔTm 1 Mb (°C) Hyperchromicityc (%)
    [salt] = 100 mM [salt] = 1 M    
AATTTCTTTCTT AAGAAAGAAATT 38.4 ± 0.3 42.1 ± 0.6 30.9 ± 0.2
19 AAGAAAGAAATT 48.4 ± 0.6 53.2 ± 0.5 +11.1 22.6 ± 0.2
TTTTTCTTTCTT AAGAAAGAAAAA 35.6 ± 0.9 37.3 ± 0.9 30.4 ± 0.5
20 AAGAAAGAAAAA 47.7 ± 0.3 52.9 ± 0.3 +15.6 29.3 ± 1.2
24 AAGAAAGAAAAA 45.0 ± 0.9 46.3 ± 0.9 +9.0 26.1 ± 1.1
TTTTTCTTTCTT CGAAAGAAAGAAAAAAGC 38.2 ± 0.2 42.1 ± 0.4 26.2 ± 0.8
20 CGAAAGAAAGAAAAAAGC 48.7 ± 0.3 53.7 ± 0.4 +11.6 30.9 ± 1.5

aAverage of four melting points ± SD at 1.6 µM strand concentration and 10 mM PIPES buffer, 10 mM MgCl2 and NaCl concentration given.

bMelting point difference to fully complementary duplex.

cHyperchromicity upon duplex dissociation at 260 nm.