Table 1. Gene list of the CycHyp signature.
| Probe | Entrez ID | GenBank | Symbol | Gene Title | |
|---|---|---|---|---|---|
| 1 | 8018860 | 332 | NM_001168 | BIRC5 | baculoviral IAP repeat containing 5 |
| 2 | 8064156 | 84619 | NM_032527 | ZGPAT * | zinc finger, CCCH-type with G patch domain |
| 3 | 8138912 | 23658 | NM_012322 | LSM5§ | LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) |
| 4 | 7921786 | 5202 | NM_012394 | PFDN2 | prefoldin subunit 2 |
| 5 | 8165011 | 2219 | NM_002003 | FCN1 | ficolin (collagen/fibrinogen domain containing) 1 |
| 6 | 7964262 | 4666 | NM_001113201 | NACA* | nascent polypeptide-associated complex alpha subunit |
| 7 | 7949792 | 5790 | NM_005608 | PTPRCAP # | protein tyrosine phosphatase, receptor type, C-associated protein |
| 8 | 8034101 | 11018 | NM_006858 | TMED1 | transmembrane emp24 protein transport domain containing 1 |
| 9 | 8168087 | 3476 | NM_001551 | IGBP1 | immunoglobulin (CD79A) binding protein 1 |
| 10 | 7963575 | 1975 | NM_001417 | EIF4B§ | eukaryotic translation initiation factor 4B |
| 11 | 8124397 | 3006 | NM_005319 | HIST1H1C # | histone cluster 1, H1c |
| 12 | 7975989 | 81892 | NM_031210 | SLIRP§ | SRA stem-loop interacting RNA binding protein |
| 13 | 8127692 | 3351 | NM_000863 | HTR1B | 5-hydroxytryptamine (serotonin) receptor 1B |
| 14 | 8127087 | 2940 | NM_000847 | GSTA3 | glutathione S-transferase alpha 3 |
| 15 | 7941122 | 29901 | NM_013299 | SAC3D1 | SAC3 domain containing 1 |
| 16 | 7998692 | 4913 | NM_002528 | NTHL1 | nth endonuclease III-like 1 (E. coli) |
| 17 | 8073623 | 758 | NM_001044370 | MPPED1 | metallophosphoesterase domain containing 1 |
| 18 | 8014865 | 4761 | NM_006160 | NEUROD2 * | neurogenic differentiation 2 |
| 19 | 8005726 | 3768 | NM_021012 | KCNJ12 | potassium inwardly-rectifying channel, subfamily J, member 12 |
| 20 | 7966631 | 64211 | NM_022363 | LHX5 * | LIM homeobox 5 |
| 21 | 8037853 | 54958 | NM_017854 | TMEM160 | transmembrane protein 160 |
| 22 | 8104136 | 3166 | NM_018942 | HMX1* | H6 family homeobox 1 |
| 23 | 7948606 | 746 | NM_014206 | C11orf10 # | chromosome 11 open reading frame 10 |
| 24 | 8044773 | 8685 | NM_006770 | MARCO | macrophage receptor with collagenous structure |
| 25 | 7947015 | 7251 | NM_006292 | TSG101 | tumor susceptibility gene 101 |
| 26 | 7931553 | 8433 | NM_003577 | UTF1 * | undifferentiated embryonic cell transcription factor 1 |
| 27 | 7956876 | 84298 | NM_032338 | LLPH | LLP homolog, long-term synaptic facilitation (Aplysia) |
| 28 | 8117372 | 8334 | NM_003512 | HIST1H2AC# | histone cluster 1, H2ac |
| 29 | 8001329 | 869 | NM_004352 | CBLN1 | cerebellin 1 precursor |
| 30 | 8027205 | 51079 | NM_015965 | NDUFA13 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 |
| 31 | 8042896 | 3196 | NM_016170 | TLX2 * | T-cell leukemia homeobox 2 |
| 32 | 7911532 | 54998 | NM_017900 | AURKAIP1 | aurora kinase A interacting protein 1 |
| 33 | 8039923 | 54998 | NM_017900 | AURKAIP1 | aurora kinase A interacting protein 1 |
| 34 | 7992043 | 65990 | BC001181 | FAM173A | family with sequence similarity 173, member A |
| 35 | 8063074 | 90204 | NM_080603 | ZSWIM1 * | zinc finger, SWIM-type containing 1 |
| 36 | 7992191 | 23430 | NM_012217 | TPSD1 | tryptase delta 1 |
| 37 | 8108435 | 7322 | NM_181838 | UBE2D2 | ubiquitin-conjugating enzyme E2D 2 |
| 38 | 8165309 | 8721 | NM_003792 | EDF1 * | endothelial differentiation-related factor 1 |
| 39 | 7946267 | 63875 | NM_022061 | MRPL17 | mitochondrial ribosomal protein L17 |
| 40 | 7945536 | 51286 | NM_016564 | CEND1 | cell cycle exit and neuronal differentiation 1 |
| 41 | 8159609 | 8636 | NM_003731 | SSNA1 # | Sjogren syndrome nuclear autoantigen 1 |
| 42 | 8005471 | 6234 | NM_001031 | RPS28 #,§ | ribosomal protein S28 |
| 43 | 8025395 | 6234 | NM_001031 | RPS28 | ribosomal protein S28 |
| 44 | 7942824 | 6234 | NM_001031 | RPS28 | ribosomal protein S28 |
| 45 | 8170753 | 26576 | NM_014370 | SRPK3 | SRSF protein kinase 3 |
| 46 | 8032718 | 1613 | NM_001348 | ||
| 47 | 7967067 | 8655 | NM_001037495 | ||
| 48 | 8159654 | 25920 | NM_015456 | COBRA1 * | cofactor of BRCA1 |
| 49 | 8011212 | 6391 | NM_003001 | SDHC | succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa |
| 50 | 8011968 | 51003 | NM_016060 | MED31 * | mediator complex subunit 31 |
| 51 | 7977440 | 9834 | NR_026800 | KIAA0125 | KIAA0125 |
| 52 | 8016508 | 11267 | NM_007241 | SNF8 * | SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) |
| 53 | 8168567 | 5456 | NM_000307 | POU3F4 * | POU class 3 homeobox 4 |
| 54 | 8086317 | 64689 | NM_031899 | GORASP1 | golgi reassembly stacking protein 1, 65kDa |
| 55 | 8052834 | 54980 | BC005079 | C2orf42 | chromosome 2 open reading frame 42 |
| 56 | 8073334 | 9978 | NM_014248 | RBX1 # | ring-box 1, E3 ubiquitin protein ligase |
| 57 | 7915846 | 8569 | NM_003684 | MKNK1 | MAP kinase interacting serine/threonine kinase 1 |
| 58 | 8071920 | 6634 | NM_004175 | SNRPD3 § | small nuclear ribonucleoprotein D3 polypeptide 18kDa |
| 59 | 8032371 | 81926 | NM_031213 | FAM108A1 | family with sequence similarity 108, member A1 |
| 60 | 7924884 | 8290 | NM_003493 | HIST3H3 | histone cluster 3, H3 |
| 61 | 8006845 | 6143 | NM_000981 | RPL19 § | ribosomal protein L19 |
| 62 | 7946812 | 6207 | NM_001017 | RPS13 #,§ | ribosomal protein S13 |
| 63 | 7949015 | 65998 | NM_001144936 | C11orf95 * | chromosome 11 open reading frame 95 |
| 64 | 8009784 | 51081 | NM_015971 | MRPS7 § | mitochondrial ribosomal protein S7 |
| 65 | 8174509 | 2787 | NM_005274 | GNG5 | guanine nucleotide binding protein (G protein), gamma 5 |
| 66 | 7906235 | 5546 | NM_005973 | PRCC § | papillary renal cell carcinoma (translocation-associated) |
| 67 | 8020179 | 57132 | NM_020412 | CHMP1B | chromatin modifying protein 1B |
| 68 | 7947450 | 4005 | NM_005574 | LMO2 | LIM domain only 2 (rhombotin-like 1) |
| 69 | 8064370 | 6939 | NM_004609 | TCF15 * | transcription factor 15 (basic helix-loop-helix) |
| 70 | 7955896 | 22818 | NM_016057 | COPZ1 | coatomer protein complex, subunit zeta 1 |
| 71 | 8137805 | 8379 | NM_003550 | MAD1L1 # | MAD1 mitotic arrest deficient-like 1 (yeast) |
| 72 | 8117334 | 8359 | NM_003538 | HIST1H4A # | histone cluster 1, H4a |
| 73 | 8117368 | 8364 | NM_003542 | HIST1H4C # | histone cluster 1, H4c |
| 74 | 7977507 | 85495 | NR_002312 | RPPH1§ | ribonuclease P RNA component H1 |
| 75 | 7949410 | 378938 | BC018448 | MALAT1 | metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) |
| 76 | 8150433 | 157848 | NM_152568 | NKX6-3 * | NK6 homeobox 3 |
| 77 | 8071168 | 29797 | NR_024583 | POM121L8P | POM121 membrane glycoprotein-like 8 pseudogene |
| 78 | 7989611 | 84191 | NM_032231 | FAM96A | family with sequence similarity 96, member A |
| 79 | 7980859 | NM_001080113 | |||
| 80 | 8032782 | 126259 | NM_144615 | TMIGD2 | transmembrane and immunoglobulin domain containing 2 |
| 81 | 8110861 | 64979 | NM_032479 | MRPL36 § | mitochondrial ribosomal protein L36 |
| 82 | 7901687 | 199964 | NM_182532 | TMEM61 | transmembrane protein 61 |
| 83 | 7916130 | 112970 | NM_138417 | KTI12 | KTI12 homolog, chromatin associated (S. cerevisiae) |
| 84 | 8048712 | 440934 | BC033986 | LOC440934 | hypothetical LOC440934 |
| 85 | 8018993 | 146713 | NM_001082575 | RBFOX3 § | RNA binding protein, fox-1 homolog (C. elegans) 3 |
| 86 | 8032601 | 84839 | NM_032753 | RAX2 | retina and anterior neural fold homeobox 2 |
| 87 | 8010719 | 201255 | NM_144999 | LRRC45 | leucine rich repeat containing 45 |
| 88 | 8036584 | 3963 | NM_002307 | LGALS7 | lectin, galactoside-binding, soluble, 7 |
| 89 | 8133209 | 441251 | NR_003666 | SPDYE7P | speedy homolog E7 (Xenopus laevis), pseudogene |
| 90 | 8159501 | 286256 | NM_178536 | LCN12 | lipocalin 12 |
| 91 | 8028546 | 3963 | NM_002307 | LGALS7 | lectin, galactoside-binding, soluble, 7 |
| 92 | 8065013 | ENST00000427835 | |||
| 93 | 8018502 | 201292 | NM_173547 | TRIM65 * | tripartite motif containing 65 |
| 94 | 7903294 | 64645 | NM_033055 | HIAT1 | hippocampus abundant transcript 1 |
| 95 | 7989473 | 388125 | NM_001007595 | C2CD4B | C2 calcium-dependent domain containing 4B |
| 96 | 8054449 | 644903 | AK095987 | FLJ38668 | hypothetical LOC644903 |
| 97 | 8081867 | 51300 | NM_016589 | TIMMDC1 | translocase of inner mitochondrial membrane domain containing 1 |
| 98 | 7934544 | 118881 | NM_144589 | COMTD1 | catechol-O-methyltransferase domain containing 1 |
| 99 | 7968260 | 219409 | NM_145657 | GSX1 * | GS homeobox 1 |
| 100 | 8022952 | 56853 | NM_020180 | CELF4 § | CUGBP, Elav-like family member 4 |
# common to the ContHyp signature
* regulators of transcription
§ involved in RNA processing