Skip to main content
. 2004 May 25;32(9):2947–2956. doi: 10.1093/nar/gkh625

Figure 2.

Figure 2

A schematic of the contacts by Ndt80 to the DNA that were derived from the Ndt80–DNA structure (10). Residues in boxes indicate base-specific contacts with the number of lines indicating the number of H-bonds with the base. The dashes for P57 indicate van der Waals interactions. Residues that make contacts with the DNA phosphate backbone are indicated with a line and circle. A ‘W’ indicates a water-mediated hydrogen bond between the protein and DNA. Bases that are underlined are identical between the MSEs used in the structural analysis and this study.