TABLE 2 .
Genes containing SNPs that correlate with the clade I/clade II division
| Genea | No. of variable positionsb | No. of bases in coding region | No. of correlating SNPsc | No. of correlating SNPs resulting in an amino acid difference | Product |
|---|---|---|---|---|---|
| DNO_0246 | 76 | 2,504 | 1 | 0 | Leucyl-tRNA synthetase |
| DNO_0309 | 25 | 1,164 | 6 | 1 | N-Acetylglucosamine-6-phosphate deacetylase |
| DNO_0330 | 117 | 1,842 | 2 | 1 | Competence family protein |
| DNO_0620 | 15 | 192 | 4 | 1 | ABC iron transporter permease |
| DNO_0817 | 13 | 816 | 2 | 0 | 2,3,4,5-Tetrahydropyridine-2-carboxylate N-succinyltransferase |
| DNO_0818 | 17 | 474 | 2 | 0 | GTP cyclohydrolase I |
| DNO_0819 | 48 | 1,236 | 1 | 0 | Two-component phosphate sensor PhoR |
| DNO_0820 | 19 | 675 | 7 | 1 | Conserved hypothetical membrane protein |
| DNO_0823 | 31 | 1,197 | 2 | 1 | Phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase |
| DNO_1034 | 80 | 1,998 | 21 | 5 | Carboxyl-terminal protease family protein |
| DNO_1167 | 29 | 1,806 | 8 | 3 | Acidic extracellular subtilisin-like protease AprV2/B2 |
| DNO_1203 | 18 | 867 | 1 | 0 | Hypothetical protein |
a
Locus tag from the VCS1703A genome annotation.
b
Positions where at least one of the 101 isolates has an SNP.
c
Positions where the sequence difference correlates with the clade I/clade II division.