Skip to main content
. 2014 Sep 18;10(10):4515–4534. doi: 10.1021/ct500643c

Table 1. Differences in the Molecular Mechanics (MM) Energy Components for 628 Conformations of Various Dipeptides after Optimization by MM or MP2/6-31++Ga.

dipeptide bond angle 1–4 LJ 1–4 elec other LJ other elec bonded sumb nonbonded sumc
Ash 2.99 ± 0.34 0.66 ± 0.98 0.96 ± 0.17 2.20 ± 1.25 0.28 ± 0.41 –1.88 ± 1.00 3.65 ± 1.15 1.57 ± 1.06
Asn 2.08 ± 0.45 0.56 ± 0.90 0.93 ± 0.15 4.16 ± 1.28 0.24 ± 0.40 –2.88 ± 1.25 2.64 ± 2.06 2.45 ± 1.01
Asp 1.92 ± 0.38 1.08 ± 0.55 0.88 ± 0.16 2.60 ± 1.01 0.58 ± 0.34 –1.98 ± 1.16 3.00 ± 0.65 2.08 ± 0.48
Cys 1.63 ± 0.24 1.46 ± 0.77 0.46 ± 0.26 2.71 ± 0.89 0.43 ± 0.14 –2.45 ± 0.80 3.09 ± 0.83 1.15 ± 0.44
Hid 3.21 ± 0.33 3.02 ± 1.03 0.83 ± 0.17 2.27 ± 0.81 0.24 ± 0.31 –2.06 ± 0.75 6.23 ± 1.05 1.28 ± 0.53
Hie 2.93 ± 0.26 2.62 ± 1.04 0.92 ± 0.17 2.71 ± 0.79 0.34 ± 0.31 –2.32 ± 0.75 5.55 ± 1.05 1.65 ± 0.47
Hip 3.17 ± 0.45 2.99 ± 1.17 1.10 ± 0.16 3.43 ± 0.95 0.70 ± 0.46 –2.61 ± 0.90 6.16 ± 1.42 2.61 ± 1.06
Ile 1.36 ± 0.29 0.89 ± 0.61 0.89 ± 0.17 2.20 ± 0.62 0.62 ± 0.58 –2.04 ± 0.49 2.25 ± 0.70 1.67 ± 0.72
Leu 1.47 ± 0.30 1.13 ± 0.59 0.64 ± 0.14 3.23 ± 0.89 0.31 ± 0.45 –2.78 ± 0.73 2.60 ± 0.70 1.40 ± 0.56
Phe 1.77 ± 0.26 0.92 ± 0.69 1.73 ± 0.18 2.34 ± 0.76 0.45 ± 0.52 –2.21 ± 0.65 2.69 ± 0.76 2.32 ± 0.62
Ser 1.59 ± 0.26 0.48 ± 0.33 0.95 ± 0.36 2.04 ± 0.73 0.49 ± 0.09 –1.83 ± 0.67 2.07 ± 0.42 1.64 ± 0.49
Thr 1.59 ± 0.27 0.46 ± 0.33 0.99 ± 0.42 2.84 ± 0.99 0.47 ± 0.12 –2.30 ± 0.86 2.05 ± 0.43 2.00 ± 0.63
Trp 2.39 ± 0.28 2.85 ± 1.02 1.64 ± 0.19 2.64 ± 0.78 0.48 ± 0.80 –2.31 ± 0.79 5.24 ± 1.07 2.44 ± 0.81
Tyr 2.16 ± 0.26 1.36 ± 0.70 1.88 ± 0.18 2.37 ± 0.76 0.43 ± 0.59 –2.39 ± 0.66 3.52 ± 0.79 2.29 ± 0.70
Val 1.42 ± 0.25 0.75 ± 0.25 0.70 ± 0.13 2.71 ± 0.54 0.40 ± 0.12 –2.32 ± 0.46 2.17 ± 0.30 1.48 ± 0.28
a

Each difference is given as an average ± standard deviation, in kcal/mol.

b

Includes bond and angle contributions.

c

Includes Lennard–Jones (LJ) and electrostatic (elec) contributions.