Table 4. Accuracy of MM Energy Estimates with Different Torsion Parametersa.
force
field accuracy |
term
count |
torsion
energy sum |
|||||
---|---|---|---|---|---|---|---|
system | V-ff14b | V-ff99c | V-ff14ntd | V-ff14 | V-ff99 | V-ff14 | V-ff99 |
Arg | 0.92 | 1.20 | 2.19 | 63 | 35 | 31.53 | 13.65 |
Ash | 1.01 | 1.38 | 3.69 | 53 | 31 | 27.25 | 16.77 |
Asn | 0.80 | 1.35 | 1.99 | 53 | 28 | 8.12 | 17.95 |
Asp | 1.74 | 3.44 | 3.61 | 41 | 28 | 14.70 | 11.57 |
Cys | 0.99 | 1.24 | 2.23 | 43 | 29 | 16.50 | 12.09 |
Cyx | 1.22 | 1.48 | 1.94 | 38 | 28 | 19.43 | 10.93 |
Glh | 0.80 | 0.99 | 2.16 | 60 | 33 | 29.16 | 14.44 |
Gln | 0.67 | 0.86 | 2.00 | 60 | 30 | 20.40 | 18.33 |
Glu | 1.27 | 1.80 | 2.04 | 48 | 30 | 16.97 | 12.32 |
Hid | 0.79 | 0.99 | 1.93 | 52 | 34 | 25.44 | 11.75 |
Hie | 0.78 | 1.03 | 1.87 | 52 | 34 | 23.26 | 11.72 |
Hip | 1.50 | 1.63 | 2.63 | 51 | 33 | 24.28 | 11.78 |
Ile | 0.64 | 1.14 | 2.28 | 63 | 33 | 24.46 | 13.25 |
Leu | 0.77 | 0.99 | 2.01 | 48 | 33 | 18.87 | 13.75 |
Lys | 1.20 | 1.57 | 2.73 | 56 | 34 | 17.28 | 14.43 |
Met | 0.79 | 0.96 | 2.13 | 49 | 29 | 15.65 | 12.86 |
Phe | 0.75 | 0.99 | 1.90 | 42 | 30 | 25.54 | 11.80 |
Ser | 0.81 | 1.00 | 1.97 | 45 | 33 | 24.83 | 12.15 |
Thr | 0.89 | 1.35 | 2.75 | 61 | 36 | 75.76 | 13.28 |
Trp | 0.79 | 1.12 | 2.40 | 55 | 37 | 40.57 | 12.03 |
Tyr | 0.79 | 0.90 | 1.95 | 45 | 32 | 24.48 | 13.09 |
Val | 0.63 | 0.81 | 1.65 | 41 | 30 | 24.43 | 11.97 |
Ala3 | 1.14 | 1.23 | 1.99 | 30 | 28 | 61.62 | 25.03 |
Gly3 | 0.96 | 1.17 | 1.85 | 21 | 19 | 43.20 | 23.71 |
In all cases, the charge set Qvac fitted to reproduce the electrostatic potentials of blocked dipeptides in vacuo was used to estimate the molecular mechanics energy of each blocked dipeptide in vacuum. All energies are given in kcal/mol.
The V-ff14 force field: Qvac has been substituted for the implicitly polarized charge set in the release version.
The ff99 force field, with Qvac as derived for V-ff14 (identical to the force field in the first column, but with a smaller torsion parameter space).
V-ff14 with no torsion Fourier series terms.