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. 2014 Jun 19;15(6):R79. doi: 10.1186/gb-2014-15-6-r79

Table 3.

Wild-type liver 3’ UTR Apobec-1 RNA targets

  RNA Chr Position Reference base RNA-seq Reads Sanger Edited/total
1.
 Serinc1
 10
 57235791 (-)
 G
 38%
 186
 9.5%
 (2/21)
2.
 Dcn*
 10
 96980667 (+)
 C
 30%
 104
 14%
 (3/21)
 
 Dcn*
 10
 96980535 (+)
 C
 14%
 370
 14%
 (3/21)
3.
 Cd36
 5
 17288955 (-)
 G
 24%
 45
 23%
 (5/21)
4.
 Cybb*
 X
 9012717 (-)
 G
 23%
 13
 18%
 (4/22)
 
 Cybb*
 X
 9012852 (-)
 G
 23%
 13
 4.5%
 (1/22)
 
 Cybb*
 X
 9013390 (-)
 G
 14%
 21
 14%
 (2/16)
5.
 Colec10*
 15
 54297696 (+)
 C
 18%
 17
 5%
 (1/20)
 
 Colec10*
 15
 54295026 (+)
 C
 13%
 39
 5%
 (1/20)
6.
 Ube2l3*
 16
 17152203 (-)
 G
 16%
 271
 45%
 (9/20)
7.
 Abcc9*
 6
 142538042 (-)
 G
 14%
 28
 14%
 (3/22)
 
 Abcc9*
 6
 142538035 (-)
 G
 11%
 52
 18%
 (4/22)
8.
 Aldh6a1
 12
 85772761 (-)
 G
 12%
 854
 14%
 (3/22)
9.
 Tmem30a
 9
 79617629 (-)
 G
 11%
 95
 8%
 (2/23)
10.
 Mpeg1*
 19
 12539179 (+)
 C
 11%
 66
 5%
 (1/21)
11.
 Usp25
 16
 77116537 (+)
 C
 BTa
 12
 9%
 (2/22)
12.
 Sh3bgrl
 X
 106355759 (+)
 C
 BTb,c
 49
 17%
 (3/18)
13.
 Cmtm6
 9
 114658289 (+)
 C
 BTb,c
 147
 4%
 (1/22)
14.
 Sep15
 3
 144259976 (+)
 C
 BTb
 379
 19%
 (4/19)
15.
 Cyp4v3
 8
 46391931 (-)
 G
 BTb
 350
 14%
 (3/22)
16.
 Rnf128
 X
 136207009 (+)
 C
 BTb,c
 260
 32%
 (7/22)
17. B2m 2 121978638 (+) C BTb 8013 9% (2/21)

BT, below threshold.

aLess than three reads supporting C-to-U editing.

bLess than 10% C-to-U editing.

cDoes not have one read per strand.

(+) Sense strand.

(-) Antisense strand.RNAs with asterisk are liver-specific (compare Figure 1).

Remaining RNAs are shared between liver and intestine.