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. 2014 Oct 15;9(10):e109821. doi: 10.1371/journal.pone.0109821

Table 2. The List of primers used in Bootscanning analysis.

Primer name Sequence (5′-3′) Location Purpose
PG3 AGGGACTTGAAAGCGAAAG 648-666 one-step RT-PCR
RT21 CTGTATTTCTGCTATTAAGTCTTTTGATGGG 3539-3509 one-step RT-PCR
gag-F2 ATGGGTGCGAGAGCGTCARTATTAA 790-814 Second-round PCR
RT20 CTGCCAGTTCTAGCTCTGCTTC 3462-3441 Second-round PCR
POL-1 TGGAAATGTGGRAARGAAGGAC 2029-2050 one-step RT-PCR
POL-2 CCTGTCTGYAGRCCCCAATATGTT 5264-5241 one-step RT-PCR
POL-3 ACTGARAGACAGGCKAATTTTTTAGGGA 2068-2095 Second-round PCR
POL-4 CTCCTAKTGGGATRTGTACTTCYGARCTTA 5221-5192 Second-round PCR