Table 4. Performance metrics of classifiers on the lung cancer test set (subtype and stage classification).
N# of Genes | Error (%) | GBS (0) | BCM (1) | AUPR (1) | |
A. On classifiers | |||||
Ben-Hamo's study | 23 | 49.3 | NA | 0.48 | 0.46 |
Hierarchical-TGDR | 66 | 53.3 | 0.3736 | 0.4401 | 0.4709 |
Pairwise Coupling | 158 | 54 | 0.3794 | 0.4371 | 0.4010 |
Multi-TGDR local | 83 | 54 | 0.3579 | 0.4210 | 0.4681 |
Multi-TGDR global | 60 | 54 | 0.3524 | 0.4164 | 0.4685 |
B. Radviz on 8-gene signature selected by subtype and stage classification | |||||
Radviz + multi-TGDR | 8 | 54.7 | 0.3423 | 0.4137 | 0.4557 |
Radviz+ naïve Bayes | 8 | 54.7 | 0.4104 | 0.4437 | 0.4494 |
Radviz+SVM | 8 | 54 | 0.3654 | 0.4137 | 0.4562 |
C. Radviz on the most frequently selected features | |||||
Radviz + multi-TGDR | 10 | 53.3 | 0.3215 | 0.4269 | 0.4710 |
Radviz+ naïve Bayes | 10 | 55.3 | 0.4256 | 0.4503 | 0.4573 |
Radviz+ SVM | 10 | 54.7 | 0.3516 | 0.3612 | 0.4815 |
NA: not available.