Table 1.
Assembly Statistics from Oxytricha Micronuclear and Macronuclear Genomes
| MIC Genome Assembly | MAC Genome Assemblya | |
|---|---|---|
| Estimated genome size (Mb) | ~490–500 | ~50b |
| Total assembly size (Mb) | 496.2 | 55.4 |
| Contig number | 25,720 | 19,152 |
| Number ≥ 200 bp | 25,720 | 19,078 (18,405)c |
| Number ≥ 10 kb | 15,942 | 249 |
| N50 (bp) (≥ 200 bp) | 27,807 | 3,597 |
| Longest (kb) | 381 | 66 |
| GC (%) | 28.4 | 31.0 |
| Repeat (%) | 35.9 | 0 |
| Gene number | 810d | 20,883 (~18,400)e |
See also Table S1.
a
The MAC genome assembly was clustered using CD-HIT (Fu et al., 2012) at 95% identity to remove redundancy before calculation of statistics. Repetitive contigs assembled from MIC contamination and bacterial contigs were also removed.
b
Taken from Swart et al. (2013).
c
Containing one or both telomeres.
d
Not including IES-less genes.
e
Estimated number (18,400) of nonredundant genes. Taken from Swart et al. (2013).