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P5/distal-P1 deletion junction in WHT3410. A, Junction sequence aligned with proximal and distal Y-chromosome reference sequences. Ovals mark 3 bp that differ between WHT3410 and the Y-chromosome reference sequence. The white box marks the 3 bp that contain the deletion junction. B, Breakpoint locations within palindrome P5 and minipalindrome P1.1, and the resulting sequence organization in WHT3410. Orange and green shading is as in figures 1 and 6.
