Table A4.
High-Resolution Breakpoint Mapping in the Proximal Arm of Palindrome P5[Note]
|
Results for |
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| STS | Length(bp) | Forward Primer | Reverse Primer | AMC0110 | WHT4396 | WHT2943 | WHT3410 |
| sY1207 | …a | …a | …a | + | + | + | + |
| 10662/3 | 312 | CTCTTGCTTGATCCTCAATTTC | ATGCCAGGAATTGGTCACA | + | |||
| 10660/1 | 346 | CCATATGCGCTTTCTCTTGC | AGAAGTCACTCTCGGTCGGA | + | |||
| 10664/5 | 443 | AGGAAGCCCAGAAATCAGAA | CAGCCTGAGTAACGTGGTGA | + | + | + | + |
| 10666/7 | 413 | TGAGATATCTACGAATTACCTTCCTG | GGAGATCAGAACCAGCCTGA | + | + | ||
| 10741/2 | 207 | AAAACCAGCTAGAGGATCAGGAC | CATCTTAGCTCTTAAAGTTTACGGG | + | + | + | + |
| 10739/40 | 420 | CAGGACATGCTGGTTCATTACA | CAATTTTGCAGAGGCCGC | + | + | + | + |
| 10821/3 | 452 | GGCAAGTTTCACAATCTGCTG | GCCCTTGGCAGGTGATAAG | + | + | ||
| 10823/4 | 1,121 | GCTTGCATTAAGAGCCAGCAC | CAAAGATGCGGGTACTGCTCTAT | − | + | ||
| 10827/8 | 743 | TCTTGATCAATGCCTTGTGAAAT | ACCCACTGTAAGTCTGACGGAA | − | − | ||
| 10737/8 | 185 | GGCAAATGCCTTTTTCTTCAC | CAAGTGTGATATCTTGCAGCCA | − | − | + | + |
| 10735/6 | 190 | CATGAGAGAGCATAACAAATCGC | CCATTATAATAACCAAGCCAAAGC | − | − | + | + |
| 10733/4 | 381 | ATAGAGGCTGCCTAGCTTTGC | CCCTGAGAGATTAGAAAAGCTGAT | − | − | + | + |
| 10731/2 | 577 | GTTGCAGTCAGCCAAGGTG | GATGGGCAGTTAGTGTAGGCATA | − | − | + | + |
| 10743/4 | 492 | GCTTCCCGGGTTCACGA | AGAGCGGCAGTGGTTTCAA | − | − | + | + |
| 10831/2 | 484 | CAAGTTTTCAGAGACGGCTGAC | GCCTGAGCCTTGGGTGGT | + | |||
| 10899/900 | 657 | CAGAGGTGACCACCCAAGG | CGTATTAATTATACAGAATGGGCTCC | + | |||
| 10901/2 | 687 | CATTGAGGCAAAGTTGAGTTAAAA | TGATGGCCATGCTACCCAT | + | |||
| 10745/6 | 305 | GAAACCTACTGCACAGGATGTTATG | ATAGGGAAAAAGTAAAGTATGCCCC | − | − | −b | + |
| 10747/8 | 387 | GAAGGTTTGTAATCTGTCCCTATG | CCAAGTGACTCACCTCCTACA | − | − | −b | + |
| 11185/6 | 159 | GTGCAGTGCACCGAGGG | CCACTGGAGAAGCGCAGTATTAA | + | |||
| 10751/2 | 244 | GCTACAAGGCTACAACCAATGG | GGTTTTAGGTCTAACATGTAAGTCCC | − | − | − | + |
| 10841/2 | 480 | AACGCCAAACACAATGACAA | ACGGACTTGCACAATGGC | + | |||
| 10843/4 | 462 | TCAGCCATTGTGCAAGTCC | ACGCTATCCCTCACCCCTT | + | |||
| 10847/8 | 306 | CTGTCTTTGTAGGTTGGCCTACA | GAACTTTGCACAGCATACCCA | + | |||
| 10974/5 | 199 | TGATCCTTGGGTATGCTGTG | AAGAGCAGCTGAATCCACG | + | |||
| sY1227 | …a | …a | …a | − | − | − | − |
| sY1228 | …a | …a | …a | − | − | − | − |
Note.— Markers are ordered from centromere to telomere within the proximal arm of P5. For location of sY1207 in the proximal arm of P5 and for the locations of sY1227 and sY1228 in the center of P5, see figure 1B.
a
For length and primers, see GenBank.
b
Additional 2.7-kb deletion; for discussion, see table A3.