Table A6.
High-Resolution Breakpoint Mapping in the Distal Arm of Palindrome P1[Note]
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Results for |
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| STS | Length(bp) | Forward Primer | Reverse Primer | WHT2943 | WHT3410 | WHT3516 | WHT3642 | WHT4426 | WHT4486 | AMC0111 | WHT2825 |
| sY1257 | …a | …a | …a | − | − | − | − | − | − | − | − |
| sY1289 | …a | …a | …a | − | − | − | + | ||||
| 10982/3 | 381 | GACATGGTCTCATCATATAGGCTG | CTAAAAACAACTGTAAGTTGCAGGT | − | + | ||||||
| 11116/7 | 286 | CTGCATTAAGTGGCTAGTGAGTTT | GAGTAAGAAAAAAAGAAGAGTGCATTT | − | + | ||||||
| 11112/3 | 173 | TTTCCCTGCAATTATAATGTGTGT | GTTTGCCACAGCCACTCTCT | − | + | ||||||
| 10769/70 | 284 | TTAGGGACCACCAGGATCAG | GGAGAGGATAGGCAAGCTCC | − | − | − | − | + | − | ||
| sY1290 | …a | …a | …a | − | − | − | + | ||||
| 10988/9 | 170 | GCGGTGTATTGGCAGATTTT | CAGTGATTCAGCATTGCAAGA | + | |||||||
| 10990/1 | 368 | GGATGAAATTAATCCCATGAATT | ATGTAAAAAATTAGCCAGTACCGG | + | |||||||
| 10829/30 | 500 | CAGCTTCCCAGGTTCATGC | CCAGAGTGACAGTGGCTCCAT | − | + | − | |||||
| 10893/4 | 155 | TGAACATAAAAGAGAGACATCAAAAC | AAAGCATACTCAAGTAATACAGCCA | − | + | − | |||||
| 10905/6 | 826 | GAGGTGGCCACCCAAGC | GACTTCCTTCATGAGTCACACAGC | − | + | − | |||||
| 10909/10 | 203 | CCTACTGCACAGGATGTTGCA | AGACGGATAATCTGTGTGGGG | − | + | − | |||||
| 10895/6 | 129 | ATAATCTTTGAGATCTGCTACGATG | AAGTTGCTACATGATTTGAGAGCT | − | + | − | |||||
| 10957/8 | 637 | GGCAAATCGGTCTGCTTTTA | CTGGAAGGTTTTGGGTTGAA | + | − | ||||||
| 10837/8 | 298 | TGGCTTCCCTTACTGTGGTC | CTCCCATGTCCCGCTAATAA | − | + | ||||||
| 10968/9 | 438 | AGATCAACGAGACAGAAAGTTAAGAAC | TACACATTTCCCTCTACATGCTGA | − | |||||||
| 10970/1 | 449 | TCTACCAGACGTACAAGGTGGAC | ATTTGTCATGGATATCCCATCC | − | − | − | |||||
| 10839/40 | 793 | AACGCCAAACACAATGACAA | TGACTTGTACAATGGCCGAA | + | + | − | − | + | |||
| 10911/2 | 533 | ATCAATCACAGGTTTGGTCTTCTC | CTGAAGCCCTCAGTGGAGAG | + | + | + | |||||
| 10755/6 | 415 | ACTGTGGGTGAGACAGACCC | CAGAACCCACTTAAGGGCAA | + | + | − | − | + | |||
| 10851/2 | 606 | CCAGGCAGCCTCTGTTTTGT | CATGAGATGAGCCTCATGAACTAC | − | − | ||||||
| 10853/4 | 189 | CCACTGTAAGTCTGACGGGG | GGATTTTGTCAGGGTAACTATGCC | − | − | ||||||
| 10913/4 | 480 | AAAGATGCAGGTACTGCTCTGC | CGGGCTCTTTACGGTGATAT | − | − | − | − | ||||
| 10915/6 | 242 | TGAGACACTGATAATTGAGTGTCAATA | ATTGGCAAGTTTCATAATCTGCTA | + | + | + | + | ||||
| 10917/8 | 148 | CTGTTCTAATATCCTGTCACTTACGC | GCACACATTTCAGTTACTATAACCTCA | + | + | ||||||
| 10919/20 | 327 | TTCCCAGCATCCAAAGTTCAT | AAGCTAGTTGATTAAAAACAAAGCAAC | + | + | ||||||
| 10921/2 | 279 | GGATCTATGTAAAGAGGAGAGTTTCCT | TAGCTCTATGTATGAAGACGTGCAT | + | + | ||||||
| 10857/8 | 465 | TGGTTTGATTGTCTATTATGCCA | CCATCTTGGCCTCATTAAGTGA | + | + | ||||||
| 10859/60 | 274 | GGCATTGGGAAAATACAGGC | GCCCAGAAAAGCCCATAGAT | + | + | ||||||
| 10861/2 | 230 | CTTTTCCACATTGTCTGTACTGATTT | GAGCAGCATTTTGGGCCT | + | + | ||||||
| 10761/2 | 340 | CCACTTGACCCCTGTCACATC | GTCCATCAGCCTAGAACCTAGACT | + | + | + | + | + | + | ||
| sY639 | …a | …a | …a | + | + | + | + | + | + | + | + |
Note.— Within the distal arm of P1, sY1257 amplifies the proximal boundary of P1.1 (fig. 1B), and sY1289 and sY1290 amplify the two arm-to-spacer boundaries in P1.1. In these patients, STSs 10988/9 through 10837/8 are ordered from centromere to telomere in the distal arm of P1.1, and STSs 10968/9 through sY639 are ordered from centromere to telomere distal to P1.1.
a
For length and primers, see GenBank.