Table 2.
Association of expanded set of candidate single nucleotide polymorphisms with blood pressure phenotypes
Index SNP | Chr | Position | Genes | WGHS | ICBP | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
A1/A2 | A1F | Genotype | BP phenotype | Beta (SE) | P valuea | Empirical P valueb | P value | ||||
Nominal significant associations in the WGHS | |||||||||||
rs1507023 | 16 | 7528435 | RBFOX1 | G/A | 0.13 | Genotyped | SBP | 0.55 (0.28) | 0.05 | 0.90 | 0.14 |
PP | 0.43 (0.16) | 0.0078 | 0.31 | ||||||||
rs2296241 | 20 | 52219626 | CYP24A1 | G/A | 0.47 | Imputed | SBP | 0.42 (0.19) | 0.023 | 0.67 | 0.08 |
DBP | 0.28 (0.12) | 0.024 | 0.68 | 0.11 | |||||||
MAP | 0.32 (0.14) | 0.022 | 0.64 | ||||||||
Nominal significant associations in the ICBP | |||||||||||
rs2853564 | 12 | 46564753 | VDR | G/A | 0.40 | Genotyped | SBP | −0.069 (0.19) | 0.72 | 1.00 | 0.045 |
rs1507023 | 16 | 7528435 | RBFOX1 | G/A | 0.13 | Genotyped | DBP | 0.23 (0.18) | 0.21 | 1.00 | 0.04 |
rs9937918 | 16 | 56159292 | GPR114 | A/G | 0.27 | Genotyped | SBP | 0.22 (0.21) | 0.30 | 1.00 | 0.02 |
DBP | 0.12 (0.14) | 0.40 | 1.00 | 0.049 | |||||||
rs6013897 | 20 | 52175886 | CYP24A1 | A/T | 0.21 | Imputed | SBP | 0.023 (0.23) | 0.92 | 1.00 | 0.045 |
DBP | −0.0081 (0.15) | 0.96 | 1.00 | 0.02 |
Candidate single nucleotide polymorphisms (SNPs) included those that have previously shown significant associations with blood pressure (BP)–related outcomes, vitamin D metabolism, or vitamin D receptor signaling. Table only shows SNPs that had significant association with any BP phenotype at nominal P < 0.05 in the Women’s Genome Health Study (WGHS) or International Consortium of Blood Pressure (ICBP). In the WGHS, analysis was adjusted for age at randomization and population stratification; data presented are effect size beta (SE) in millimeters of mercury per coded allele; all imputation r 2 > 0.80. In the ICBP, P for SNP presented are genome-wide meta-analysis P values after correction for genomic control.
Abbreviations: A1, coded allele; A2, noncoded allele; A1F, coded allele frequency; Chr, chromosome; DBP, diastolic blood pressure; MAP, mean arterial pressure; NA, not available; PP, pulse pressure; SBP, systolic blood pressure.
aNominal P value.
bEmpirical P value after correction for multiple testing.