TABLE 1.
Organisma | Isolation source | Sequencing and assembly methods | Size (Mb) | G+C content (%) | No. of CDSs | No. of rrn operons | No. of tRNAs | No. of Transposases | No. of cold shock genes | GenBank accession no. | No. of contigs |
---|---|---|---|---|---|---|---|---|---|---|---|
E. acetylicum DSM 20416T | Creamery waste, UK | PacBio, HGAP | 3.28 | 47 | 3,323 | 9 | 69 | 40 | 3 | JNIR00000000 | 3 |
E. oxidotolerans JCM 12280T | Fish drain, Japan | PacBio, HGAP | 3.09 | 47 | 3,053 | 9 | 69 | 34 | 6 | JNIS00000000 | 3 |
E. undae DSM 14481T | Garden pond, Germany | Illumina, AllPaths-LG | 3.25 | 48 | 3,287 | 4 | 56 | 12 | 2 | JHZV00000000 | 4 |
E. antarcticum DSM 14480T | Microbial mat, Antarctica | PacBio, HGAP | 3.22 | 47 | 3,250 | 10 | 69 | 89 | 7 | JMKS00000000 | 7 |
E. sibiricum 7-3 | Permafrost, Siberia, Russia | Illumina, AllPaths-LG | 3.08 | 47 | 3,141 | 4 | 48 | 9 | 3 | JHZS00000000 | 7 |
E. undae 190-11 | Permafrost, Siberia, Russia | Illumina, AllPaths-LG | 3.21 | 48 | 3,236 | 5 | 61 | 17 | 3 | JHZU00000000 | 4 |
E. aurantiacum DSM 6208T | Potato wash, UK | PacBio, HGAP | 3.04 | 53 | 3,067 | 9 | 67 | 90 | 2 | JNIQ00000000 | 2 |
E. marinum DSM 16307T | Marine, Yellow Sea, South Korea | Illumina, AllPaths-LG | 2.81 | 47 | 2,836 | 8 | 60 | 15 | 2 | JHZT00000000 | 2 |
Exiguobacterium sp. GIC31 | Glacier ice, Greenland | PacBio, HGAP | 2.97 | 52 | 3,005 | 9 | 67 | 38 | 2 | JNIP00000000 | 2 |
Exiguobacterium sp. NG55 | Hot spring, Yellowstone Park, USA | PacBio, HGAP | 3.14 | 48 | 3,169 | 11 | 68 | 27 | 2 | JPOD00000000 | 5 |
Type strains (T) were obtained from the German Collection of Microorganisms and Cell Cultures (DSM) or Japan Collection of Microorganisms (JCM).