TABLE 3.

Summary of SNP marker characterization^a

Chromosome	No. of markersb		Total no. of polymorphisms	No. of base pairs sequenced	SNP frequency (1 SNP/no. of bp)	No. of SNPs	No. of indels	No. of transitions	No. of transversions
	Heterozygous	Homozygous							G/T (C/A)	C/G	A/T
R	18	3	56	5,507	1/98	55	1	47	4	2	2
1	23	2	103	8,117	1/79	101	2	76	15	1	9
2	21	3	74	5,690	1/77	74	0	54	11	2	7
3	10	2	38	3,739	1/98	36	2	29	3	2	4
4	19	0	101	4,785	1/47	99	2	76	6	6	11
5	17	2	75	8,103	1/108	74	1	60	5	6	3
6	11	1	60	2,894	1/48	60	0	44	4	6	6
7	10	4	53	6,288	1/119	53	0	42	5	3	3
Unknown	2	2	10	1,959	1/196	9	1	9	0	0	0
Total	131	19	570	47,190	1/83	561	9	437	53	28	45

^aMarkers are ordered and summarized by chromosomal location. For each chromosome, the number of heterozygous and homozygous SNP markers is given followed by the total number of SNP markers. The number of bp sequenced is listed followed by the frequency of SNPs. The number of SNPs and indels is given and the total number of SNPs is categorized into transition and transversion events.

^bHeterozygous and homozygous markers were based on sequences obtained for C. albicans strain SC5314.