Table A1.
Results of preferred Model 3 (see main text, Table 1). It includes the mean, SD and the 2.5 and 97.5% credible intervals (CI) of the posterior distribution for θ (theta), μ (mu), and σwithin line j (sigma.with.line) of each line for (A) B. pumilus B215 and (B) E. coli OP50. These results are of 30000 sampled values at 10001 post burn-in
| Node | Mean | SD | 2.5% CI | 97.5% CI |
|---|---|---|---|---|
| (A) B. pumilus | ||||
| Theta | 97.64 | 9.20 | 79.71 | 116.00 |
| mu[1] | 126.50 | 18.95 | 88.37 | 162.90 |
| mu[2] | 86.50 | 10.22 | 66.49 | 107.00 |
| mu[3] | 52.48 | 5.86 | 41.03 | 64.34 |
| mu[4] | 111.90 | 18.38 | 75.10 | 148.10 |
| mu[5] | 83.39 | 14.86 | 54.16 | 112.90 |
| mu[6] | 139.80 | 8.55 | 122.20 | 156.20 |
| mu[7] | 124.60 | 22.56 | 79.17 | 168.40 |
| mu[8] | 107.80 | 15.83 | 75.98 | 138.60 |
| mu[9] | 48.57 | 7.96 | 33.23 | 64.78 |
| mu[10] | 167.30 | 19.26 | 126.30 | 202.30 |
| mu[11] | 35.16 | 8.09 | 19.78 | 51.80 |
| mu[12] | 105.00 | 17.32 | 70.98 | 139.40 |
| mu[13] | 126.10 | 13.23 | 99.02 | 151.90 |
| mu[14] | 65.02 | 13.14 | 39.53 | 92.04 |
| mu[15] | 80.99 | 9.42 | 62.40 | 99.70 |
| mu[16] | 120.80 | 13.78 | 92.75 | 147.60 |
| mu[17] | 116.10 | 10.51 | 94.86 | 136.80 |
| mu[18] | 59.88 | 15.37 | 30.43 | 91.21 |
| mu[19] | 68.13 | 21.11 | 27.12 | 110.70 |
| mu[20] | 91.59 | 12.53 | 67.13 | 116.80 |
| mu[21] | 132.50 | 9.40 | 113.40 | 150.90 |
| sigma.residual | 38.64 | 7.35 | 26.95 | 55.48 |
| sigma.with.line[1] | 6926.00 | 3091.00 | 3212.00 | 14760.00 |
| sigma.with.line[2] | 1714.00 | 748.70 | 801.90 | 3603.00 |
| sigma.with.line[3] | 525.80 | 234.90 | 242.90 | 1113.00 |
| sigma.with.line[4] | 6719.00 | 2957.00 | 3113.00 | 14240.00 |
| sigma.with.line[5] | 3986.00 | 1766.00 | 1848.00 | 8491.00 |
| sigma.with.line[6] | 1126.00 | 503.30 | 519.30 | 2427.00 |
| sigma.with.line[7] | 11310.00 | 4958.00 | 5224.00 | 23820.00 |
| sigma.with.line[8] | 4590.00 | 2026.00 | 2131.00 | 9615.00 |
| sigma.with.line[9] | 963.30 | 427.40 | 441.20 | 2039.00 |
| sigma.with.line[10] | 5765.00 | 2759.00 | 2528.00 | 12760.00 |
| sigma.with.line[11] | 984.90 | 446.10 | 449.70 | 2121.00 |
| sigma.with.line[12] | 5870.00 | 2547.00 | 2731.00 | 12460.00 |
| sigma.with.line[13] | 2942.00 | 1307.00 | 1337.00 | 6272.00 |
| sigma.with.line[14] | 2932.00 | 1305.00 | 1341.00 | 6194.00 |
| sigma.with.line[15] | 1435.00 | 637.00 | 665.40 | 3023.00 |
| sigma.with.line[16] | 3253.00 | 1429.00 | 1505.00 | 6919.00 |
| sigma.with.line[17] | 1816.00 | 796.60 | 839.50 | 3817.00 |
| sigma.with.line[18] | 4120.00 | 1820.00 | 1882.00 | 8700.00 |
| sigma.with.line[19] | 9274.00 | 4025.00 | 4354.00 | 19330.00 |
| sigma.with.line[20] | 2728.00 | 1205.00 | 1251.00 | 5788.00 |
| sigma.with.line[21] | 1405.00 | 626.50 | 647.30 | 2980.00 |
| (B) E. coli | ||||
| Theta | 248.50 | 10.50 | 227.30 | 268.90 |
| mu[1] | 284.80 | 10.41 | 263.80 | 305.00 |
| mu[2] | 229.20 | 13.43 | 203.00 | 256.20 |
| mu[3] | 276.40 | 8.19 | 259.90 | 292.50 |
| mu[4] | 236.30 | 20.35 | 196.20 | 276.90 |
| mu[5] | 175.00 | 20.33 | 136.90 | 217.80 |
| mu[6] | 292.60 | 5.61 | 281.20 | 303.50 |
| mu[7] | 215.60 | 20.44 | 176.10 | 256.90 |
| mu[8] | 299.30 | 10.62 | 277.50 | 319.70 |
| mu[9] | 272.20 | 9.69 | 252.60 | 291.20 |
| mu[10] | 275.80 | 14.45 | 246.40 | 303.70 |
| mu[11] | 233.50 | 14.97 | 204.20 | 263.60 |
| mu[12] | 247.40 | 21.46 | 205.30 | 290.00 |
| mu[13] | 232.70 | 16.58 | 200.00 | 266.10 |
| mu[14] | 162.60 | 25.75 | 116.50 | 218.20 |
| mu[15] | 260.50 | 10.77 | 238.80 | 281.50 |
| mu[16] | 267.20 | 21.51 | 223.70 | 309.10 |
| mu[17] | 298.20 | 12.51 | 272.40 | 322.30 |
| mu[18] | 222.70 | 24.52 | 174.80 | 271.60 |
| mu[19] | 211.30 | 21.02 | 170.50 | 254.00 |
| mu[20] | 295.50 | 7.34 | 280.80 | 310.00 |
| mu[21] | 228.20 | 18.98 | 191.30 | 266.50 |
| sigma.residual | 43.77 | 8.67 | 29.53 | 63.69 |
| sigma.with.line[1] | 1701.00 | 764.30 | 786.80 | 3625.00 |
| sigma.with.line[2] | 3035.00 | 1325.00 | 1419.00 | 6382.00 |
| sigma.with.line[3] | 1055.00 | 468.40 | 488.40 | 2243.00 |
| sigma.with.line[4] | 8152.00 | 3576.00 | 3768.00 | 17210.00 |
| sigma.with.line[5] | 6476.00 | 3057.00 | 2878.00 | 14270.00 |
| sigma.with.line[6] | 473.60 | 211.30 | 218.70 | 1019.00 |
| sigma.with.line[7] | 7855.00 | 3446.00 | 3620.00 | 16670.00 |
| sigma.with.line[8] | 1742.00 | 789.10 | 798.60 | 3703.00 |
| sigma.with.line[9] | 1464.00 | 644.80 | 672.60 | 3086.00 |
| sigma.with.line[10] | 3529.00 | 1564.00 | 1622.00 | 7536.00 |
| sigma.with.line[11] | 3856.00 | 1702.00 | 1778.00 | 8202.00 |
| sigma.with.line[12] | 9578.00 | 4147.00 | 4461.00 | 20310.00 |
| sigma.with.line[13] | 4882.00 | 2148.00 | 2235.00 | 10360.00 |
| sigma.with.line[14] | 9887.00 | 4963.00 | 4191.00 | 22680.00 |
| sigma.with.line[15] | 1883.00 | 833.00 | 872.40 | 3973.00 |
| sigma.with.line[16] | 9301.00 | 4038.00 | 4330.00 | 19590.00 |
| sigma.with.line[17] | 2513.00 | 1115.00 | 1152.00 | 5317.00 |
| sigma.with.line[18] | 13180.00 | 5713.00 | 6076.00 | 27480.00 |
| sigma.with.line[19] | 8282.00 | 3619.00 | 3874.00 | 17360.00 |
| sigma.with.line[20] | 840.70 | 376.40 | 383.50 | 1794.00 |
| sigma.with.line[21] | 6765.00 | 2974.00 | 3131.00 | 14230.00 |