Table 5. Sequence variants identified from transcriptome data.

Variants	S1		S2		S3		Total
	SNV	Indel	SNV	Indel	SNV	Indel	SNV	Indel
exonic	95	27	81	26	89	28	264	82
synonymous SNV	26	0	26	0	22	0	74	0
nonsynonymous SNV	67	0	50	0	65	0	181	0
stopgain	2	3	5	1	2	1	9	5
frameshift insertion	0	15	0	13	0	10	0	38
nonframeshift insertion	0	1	0	2	0	1	0	5
frameshift deletion	0	8	0	7	0	12	0	27
nonframeshift deletion	0	0	0	3	0	4	0	7
splicing	1	0	0	1	0	1	1	2
UTR3	209	59	201	70	180	80	587	209
UTR5	23	10	8	9	16	1	47	20
downstream	28	4	30	3	16	2	74	9
upstream	5	0	2	1	5	0	12	1
intronic	185	19	189	27	38	4	404	50
intergenic	114	11	92	8	41	5	244	25
Total	659	130	603	145	383	121	1630	398