Table 1. Genes in A. oleivorans DR1 commonly upregulated by Amp, Km, Tc, and Nor.

Locus_tag DR1	Product	Genes	Fold-change
			Amp	Km	Tc	Nor
AOLE_02445	Enoyl-CoA hydratase	caiD	4.62	1.78	2.34	1.87
AOLE_04025	Metal-dependent hydrolase		3.84	2.97	4.43	2.45
AOLE_06735	Putative short-chain dehydrogenase		4.15	2.37	3.63	1.92
AOLE_06795	Alkylhydroperoxidase		2.94	2.23	2.92	1.58
AOLE_08565	AraC-type DNA-binding domain-containing protein	araC	15.35	3.55	3.11	2.10
AOLE_08595	3-Oxoadipate enol-lactonase	mhpC	3.08	1.78	2.73	1.57
AOLE_08710	3-Oxoacyl-(acyl-carrier-protein) reductase	fabG	4.18	4.13	3.10	2.09
AOLE_08725	NIPSNAP family protein		3.35	3.55	6.22	2.09
AOLE_08765	Shikimate dehydrogenase	aroE	15.61	7.14	12.13	5.26
AOLE_09075	Transcriptional regulator	lysR	5.71	4.27	2.03	1.68
AOLE_09435	DoxX family protein		2.24	7.09	5.44	1.57
AOLE_09590	Putative tonB-like protein	tonB	1.57	3.90	3.42	1.67
AOLE_10175	Putative aliphatic sulfonate-binding protein	tauA	2.69	2.04	5.02	1.65
AOLE_11820	Major facilitator superfamily transporter	araJ	144.14	3.30	5.23	2.84
AOLE_11830	Methyltransferase domain-containing protein	ubiE	157.57	3.56	4.10	1.84
AOLE_12115	DMT-family permease		3.07	2.36	3.88	2.44
AOLE_12135	Redox-sensitive transcriptional activator SoxR	soxR	2.52	4.00	2.53	2.88
AOLE_12655	ECF subfamily protein RNA polymerase sigma-24 subunit	rpoE	5.05	3.56	1.82	1.75
AOLE_12705	Glycine betaine ABC transporter substrate-binding protein	tauA	1.71	1.77	1.75	2.49
AOLE_12875	Phenylacetic acid degradation protein	paaI	17.54	3.56	4.68	2.10
AOLE_13495	Competence-damaged family protein	cinA	5.05	13.36	7.42	2.63
AOLE_14540	Peptide deformylase	def	2.87	4.45	1.85	2.75
AOLE_14590	3-Phenylpropionate dioxygenase ferredoxin	nirB	2.44	2.85	3.75	1.58
AOLE_14800	RNA polymerase sigma factor FecI	rpoE	27.98	17.79	1.87	2.94
AOLE_16560	Short-chain dehydrogenase		1.71	2.44	2.24	1.57
AOLE_18975	GNAT family acetyltransferase		5.39	6.56	2.78	1.70