Table 1. Characterization of the viral sequence reads with high sequence identities to known viruses.
Coronaviridae | Herpesviridae | Caliciviridae 1 | Caliciviridae 2 | Picobirnaviridae | Parvoviridae | |
Match | Feline coronavirus | Felid herpesvirus 1 | Feline calicivirus | Norovirus cat | Feline/human picobirnavirus | Feline panleukopenia virus |
GenBank accession no(s). | DQ160294EU186072FJ938051JQ408981 | FJ478159 | AAB23553AY560114Z11536 | JF781268 | KF792838,AF246941 | X55115EU659112JN867595 |
Amino acid identity (%) | >93 | 76–79 | 92–100 | 96–98 | 78–100 | 98–100 |
Total reads | 24 425 | 2 | 47 | 2 | 31 | 499 |
Presence in pool no(s). | 2, 3, 5 | 6 | 2, 5 | 1 | 1, 4, 6 | 3, 4 |