Table 1.
Speciesa | Size (bp) | AT Content (%) |
AT Skew | GC Skew | Size Portion (%) |
|||||
---|---|---|---|---|---|---|---|---|---|---|
PCGsb | RNAc | Noncoding | Overall | PCGs | RNA | Noncoding | ||||
Heterolobosea | ||||||||||
Acrasis kona | 51,458 | 84.0 | 72.4 | 89.8 | 83.3 | 0.102 | 0.354 | 82.5 | 10.7 | 6.8 |
Naegleria gruberi | 49,843 | 79.3 | 67.1 | 85.0 | 77.8 | −0.087 | 0.170 | 81.2 | 11.9 | 6.9 |
Naegleria fowleri | 49,531 | 75.9 | 60.5 | 83.2 | 74.8 | −0.079 | 0.196 | 79.9 | 11.6 | 8.5 |
Jakobida | ||||||||||
Andalucia godoyi | 67,656 | 64.3 | 51.3 | 69.4 | 63.7 | −0.012 | 0.015 | 81.0 | 10.2 | 8.8 |
Histiona aroides | 70,177 | 64.7 | 52.5 | 67.2 | 64.6 | −0.308 | 0.047 | 81.2 | 9.7 | 9.1 |
Jakoba bahamiensis | 65,327 | 68.3 | 54.0 | 76.8 | 67.8 | −0.102 | 0.138 | 82.1 | 10.1 | 7.8 |
Jakoba liberad | 100,252 | 67.8 | 55.5 | 72.1 | 68.0 | 0.041 | −0.017 | 72.0 | 7.0 | 21.0 |
Reclinomonas americana | 69,586 | 73.7 | 55.3 | 83.2 | 73.2 | −0.023 | 0.125 | 80.2 | 9.8 | 10.0 |
Seculamonas ecuadoriensis | 69,158 | 68.2 | 53.9 | 76.8 | 68.1 | 0.017 | −0.011 | 77.8 | 9.7 | 12.5 |
Tsukubamonadida | ||||||||||
Tsukubamonas globosa | 48,463 | 67.4 | 56.5 | 70.6 | 66.2 | −0.136 | 0.100 | 76.8 | 13.7 | 9.5 |
aGenBank accession number: A. kona KJ679272; N. gruberi AF288092; N. fowleri JX174181; A. godoyi KC353352; H. aroides KC353353; J. bahamiensis KC353354; J. libera KC353355; R. americana KC353356; S. ecuadoriensis KC353359; T. globosa AB854048.
bPutative coding regions including annotated protein-coding genes and unknown ORFs.
cHeterolobosea and Tsukubamonadida (rRNA and tRNA); Jakobida (rRNA, tRNA, RNase P-RNA, and tmRNA).
dmtDNA is linear.