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. 2014 Sep 5;6(9):2406–2423. doi: 10.1093/gbe/evu190

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© The Author(s) 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 3.— — Phylogenetic tree of actinoporin-like sequences. Phylogenetic reconstruction was performed with RAxML (7.4.2 SSE3-PTHREADS) (Stamatakis and Alachiotis 2010), -f a, PROTGAMMAIWAG, 1,000 bootstrap pseudoreplicates. Bootstrap support values given for all nodes. Clade names are indicated by colored vertical bars, common names are given for clades with disputed monophyletic status. Glycera and polychaete transcripts are highlighted in orange. Sequences obtained from UniProt are denoted by “tr” or “sp” prefixes. Search strategies that identified a given Glycera sequence are labeled behind the species names as follows: Hm, HMMER; HD, HMMERDomain; IP, Interpro. The tree is rooted with a nonvenomous taxon (indicated by a star).