Table 3. Steady-State Kinetic Parameters for dNTP Incorporation Opposite 8-oxoG by Wild-Type and Variant hPols ι(1-445) in the Presence of 5 mM Mg2+.
pol ι(1–445) | dNTP | Km (μM) | kcat (s–1) | kcat/Km (s–1 mM–1) | finsa | relative efficiencyb |
---|---|---|---|---|---|---|
wild-type | A | 1300 ± 200 | 0.00081 ± 0.00005 | 0.00062 | 0.077 | |
T | 1600 ± 300 | 0.0027 ± 0.0002 | 0.0017 | 0.27 | ||
G | 230 ± 40 | 0.0032 ± 0.0001 | 0.014 | 1.7 | ||
C | 1600 ± 300 | 0.013 ± 0.001 | 0.0081 | 1 | 1 | |
Δ1–25 | A | 530 ± 80 | 0.0034 ± 0.00017 | 0.0064 | 0.13 | |
T | 510 ± 70 | 0.0074 ± 0.0003 | 0.015 | 0.31 | ||
G | 120 ± 10 | 0.0061 ± 0.00014 | 0.051 | 1.1 | ||
C | 1200 ± 100 | 0.057 ± 0.002 | 0.048 | 1 | 5.9 | |
ΔD17 | A | 1000 ± 200 | 0.00088 ± 0.00005 | 0.00088 | 0.14 | |
T | 2400 ± 200 | 0.0046 ± 0.0001 | 0.0019 | 0.30 | ||
G | 530 ± 50 | 0.0062 ± 0.0002 | 0.012 | 1.9 | ||
C | 4000 ± 900 | 0.025 ± 0.003 | 0.0063 | 1 | 0.78 | |
R96G | A | 840 ± 30c | 0.000072 ± 0.000008 | 0.000086 | 0.36 | |
T | 290 ± 70 | 0.00018 ± 0.00001 | 0.00062 | 2.6 | ||
G | 160 ± 20c | 0.00010 ± 0.000003 | 0.00063 | 2.6 | ||
C | 1900 ± 400 | 0.00045 ± 0.00004 | 0.00024 | 1 | 0.030 | |
I261M | A | 820 ± 110 | 0.00075 ± 0.00003 | 0.00092 | 0.21 | |
T | 1400 ± 300 | 0.0028 ± 0.0002 | 0.0020 | 0.47 | ||
G | 320 ± 20 | 0.0044 ± 0.0001 | 0.014 | 3.3 | ||
C | 2100 ± 300 | 0.0090 ± 0.0005 | 0.0043 | 1 | 0.53 | |
E276K | A | 1500 ± 100 | 0.0010 ± 0.00002 | 0.00066 | 0.11 | |
T | 2200 ± 200 | 0.0055 ± 0.0002 | 0.0025 | 0.43 | ||
G | 920 ± 30 | 0.012 ± 0.0001 | 0.013 | 2.2 | ||
C | 3800 ± 200 | 0.022 ± 0.001 | 0.0058 | 1 | 0.72 | |
Y374N | A | 1000 ± 100 | 0.00061 ± 0.00003 | 0.00061 | 0.086 | |
T | 1200 ± 200 | 0.0023 ± 0.0001 | 0.0019 | 0.27 | ||
G | 260 ± 20 | 0.0030 ± 0.0001 | 0.013 | 1.8 | ||
C | 1700 ± 800 | 0.012 ± 0.002 | 0.0071 | 1 | 0.88 |
Misinsertion frequency, calculated by dividing kcat/Km for dNTP incorporation by the kcat/Km for dCTP incorporation opposite 8-oxoG. All values are presented to two significant digits.
Relative efficiency, calculated by dividing kcat/Km of each pol ι(1–445) for dCTP incorporation opposite 8-oxoG by kcat/Km of wild-type pol ι(1–445) for dCTP incorporation opposite 8-oxoG.
The apparent Km value, determined under the condition where the amount of enzyme is greater than the amount of DNA and thus is not strictly steady-state.