Table 7. Steady-State Kinetic Parameters for dNTP Incorporation Opposite Abasic Site by Wild-Type and Variant hPols ι(1-445) in the Presence of 0.15 mM Mn2+.
pol ι(1–445) | dNTP | Km (μM) | kcat (s–1) | kcat/Km (s–1 mM–1) | dNTP selectivity ratioa | relative efficiencyb |
---|---|---|---|---|---|---|
wild-type | A | 0.68 ± 0.04 | 0.012 ± 0.0001 | 18 | 0.18 | |
T | 1.5 ± 0.1 | 0.064 ± 0.001 | 43 | 0.43 | ||
G | 0.29 ± 0.06 | 0.029 ± 0.001 | 100 | 1 | 1 | |
C | 2.8 ± 0.1 | 0.066 ± 0.001 | 24 | 0.24 | ||
Δ1–25 | A | 0.50 ± 0.06 | 0.010 ± 0.003 | 20 | 0.22 | |
T | 1.1 ± 0.1 | 0.024 ± 0.001 | 22 | 0.24 | ||
G | 0.099 ± 0.005 | 0.0091 ± 0.0001 | 92 | 1 | 0.92 | |
C | 0.98 ± 0.08 | 0.043 ± 0.001 | 44 | 0.48 | ||
ΔD17 | A | 0.83 ± 0.13 | 0.016 ± 0.001 | 19 | 0.31 | |
T | 1.8 ± 0.2 | 0.048 ± 0.001 | 27 | 0.44 | ||
G | 0.34 ± 0.04 | 0.021 ± 0.0004 | 62 | 1 | 0.62 | |
C | 1.8 ± 0.3 | 0.11 ± 0.004 | 61 | 0.98 | ||
R96G | A | 1.9 ± 0.3 | 0.011 ± 0.0004 | 5.8 | 0.76 | |
T | 1.9 ± 0.2 | 0.0088 ± 0.0002 | 4.6 | 0.61 | ||
G | 0.49 ± 0.06 | 0.0037 ± 0.0001 | 7.6 | 1 | 0.076 | |
C | 3.4 ± 0.3 | 0.015 ± 0.0004 | 4.4 | 0.58 | ||
I261M | A | 0.35 ± 0.05 | 0.021 ± 0.001 | 60 | 0.50 | |
T | 1.3 ± 0.09 | 0.026 ± 0.0004 | 20 | 0.17 | ||
G | 0.27 ± 0.02 | 0.032 ± 0.001 | 120 | 1 | 1.2 | |
C | 2.5 ± 0.4 | 0.050 ± 0.002 | 20 | 0.17 | ||
E276K | A | 0.72 ± 0.11 | 0.017 ± 0.001 | 24 | 0.39 | |
T | 2.7 ± 0.3 | 0.028 ± 0.0007 | 10 | 0.16 | ||
G | 0.34 ± 0.02 | 0.021 ± 0.0002 | 62 | 1 | 0.62 | |
C | 2.2 ± 0.1 | 0.041 ± 0.0005 | 19 | 0.31 | ||
Y374N | A | 0.71 ± 0.09 | 0.026 ± 0.001 | 37 | 0.38 | |
T | 2.0 ± 0.2 | 0.082 ± 0.002 | 41 | 0.42 | ||
G | 0.39 ± 0.03 | 0.038 ± 0.001 | 97 | 1 | 0.97 | |
C | 3.3 ± 0.3 | 0.047 ± 0.001 | 14 | 0.14 |
dNTP selectivity ratio, calculated by dividing kcat/Km for each dNTP incorporation by the highest kcat/Km for dNTP incorporation opposite the abasic site. All values are presented to two significant digits.
Relative efficiency, calculated by dividing kcat/Km of each pol ι(1–445) for dGTP incorporation opposite the abasic site by kcat/Km of wild-type pol ι(1–445) for dGTP incorporation opposite the abasic site.